Shoumian Li

Paramarasmius mesosporus is a wild edible mushroom with a strong aroma and high culinary value, capable of growing at temperatures up to 36 °C. However, its domestication system and the genetic basis of its sexual reproduction remain largely unexplored. In this study, fresh fruiting bodies of P. mesosporus were collected from the rhizosphere of Imperata spp. in saline–alkali land in Hebei Province, China. The species was successfully domesticated for the first time, and fruiting bodies were harvested 7–10 days after spawning. A chromosome-level genome of the monokaryotic strain ‘Q2’ was assembled using whole-genome sequencing, transcriptome analysis, and Hi-C technology, with a total size of 46.57 Mb that was anchored onto 11 pseudochromosomes at a mounting rate of 95.18%. The mating-type system was identified as a typical tetrapolar heterothallic type, with the MAT A and MAT B loci located on chromosomes 2 and 10, respectively. The MAT A locus encodes HD1, HD2, MIP, and β-fg, among which tr-HD1 was found to be pseudogenized due to domain truncation. The MAT B locus comprises seven pheromone receptor genes and seven pheromone precursor genes arranged in an interspersed pattern. Based on these genomic features, a preliminary MAPK signaling pathway model was proposed to elucidate the molecular regulation of sexual reproduction. This study achieved the first artificial domestication and cultivation of P. mesosporus. systematically elucidated genomic characteristics and mating-type molecular mechanisms of this species were systematically elucidated, providing a theoretical foundation for hybrid breeding, molecular marker-assisted selection, and genetic improvement. These findings hold significant scientific and applied value for germplasm innovation and industrial development of this rare edible mushroom.

The edible fungi industry is a characteristic agricultural industry that combines economic value, ecological value, and social benefits

Morchella spp. are rare and highly valued edible fungi that often exhibit unstable yield and quality under protected cultivation due to inadequate regulation of the light and temperature microenvironment. Colored films can effectively optimize these conditions. In this study, the effects of six colored film treatments—white film (WM), red film (RM), green film (GM), blue film (BM), black film (BKM), and silver-black film (SBM)—on the microenvironment and development of Morchella septimelata and M. sextelata were investigated. The results showed that the BM treatment improved the microenvironment and promoted Morchella development. BM exhibited high transmittance, enhancing light intensity and increasing accumulated air and soil temperatures. It also led to the production of the greatest number of mature fruiting bodies, with 46 per square meter for M. septimelata and 54 per square meter for M. sextelata. Agronomic traits were also superior under the BM treatment, with pileus lengths of 82.97 mm for M. septimelata and 70.76 mm for M. sextelata. Compared with WM, BM significantly increased the weight of a single fruiting body and yield by 12.23% and 20.86% for M. septimelata and by 18.14% and 25.34% for M. sextelata, respectively. BM also significantly increased crude fiber content by 16.92% in M. septimelata and 2.63% in M. sextelata. RM significantly increased crude polysaccharide content by 47.42% in M. septimelata and by 44.12% in M. sextelata. This study indicated that BM was the preferred choice for Morchella protected cultivation.

Bioconversion of lignocellulosic biomass into edible, nutrient-rich products using low-cost forestry waste offers substantial ecological and economic benefits. Composting forestry waste as a substrate for oyster mushroom (Pleurotus ostreatus) cultivation is an effective recovery strategy. However, the specific microbial-driven mechanisms by which nitrogen sources regulate lignocellulose degradation and compost quality during forestry waste composting for Pleurotus ostreatus substrate preparation remain to be elucidated. We evaluated three organic nitrogen sources (bran, soybean meal, and chicken manure) and one inorganic source (diammonium phosphate, DAP) during composting of forest-waste-based substrates. Composting performance and cultivation outcomes were assessed using physicochemical analyses, lignocellulose degradation measurements, high-throughput sequencing of bacterial 16S rRNA and fungal ITS, and biological efficiency. Organic nitrogen sources enhanced compost temperature and lignocellulose degradation by providing sustained nitrogen release, promoting stable colonization of core microbial communities and cooperative bacteria–fungi networks. In contrast, inorganic nitrogen resulted in slower heating, minimal lignocellulose degradation (0.75%), and unstable, competition-dominated microbial networks. Nitrogen sources indirectly shaped microbial communities by regulating the C/N ratio, pH, and electrical conductivity. Lignocellulose degradation and bacterial diversity significantly influenced mushroom biological efficiency, with bacterial diversity strongly regulating degradation rates. The forest waste–bran treatment achieved the highest biological efficiency (78.35%). These findings offer a practical strategy for optimizing forestry waste bioconversion into fungal protein.

A genetic linkage map of Grifola albicans f. huishuhua (Maitake) is an important resource for chromosome analysis and the genetic basis of phenotypic variation determination. A total of 92 monokaryotic isolates were selected from the F1 generation of Q3-8 × Y1-18 in this study. Restriction site-associated DNA sequencing, as well as identification of single nucleotide polymorphisms (SNPs), was performed, aiming to illustrate a high-density genetic linkage map. A total of 1122 high-quality SNP markers were located on a map with a length of 1473.60 centimorgan (cM) by screening 589534 SNPs. This map covers 12 linkage groups (LGs) with an average genetic distance of 122.80 cM. Three quantitative trait loci (QTLs) related to the growth rate of G. albicans f. huishuhua strains were identified using the composite interval mapping method. These QTLs were mapped to linkage groups (LGs) as follows: LG3 (qmgv), LG4 (qmb), LG5 (qmd), LG8 (qrdm1, qrdm2), and LG10 (qmgrc1, qmgrc2, qmgrc3). The genes associated with mycelial growth rate and biomass production of these strains were identified. This information could be used for molecular marker-assisted selective breeding in G. albicans f. huishuhua.

The phenotypic features and yield of Lentinula edodes fruiting bodies are key metrics in breeding, cultivation, and quality evaluation. To overcome the inefficiency and physical damage associated with manual measurement, this paper proposes an automated approach using a lightweight YOLOv11-Seg model. On the basis of the YOLOv11-Seg model, the ShuffleNetV2 network, the C3k2-FasterBlock feature extraction module, and the convolutional block attention module (CBAM) were introduced to construct a lightweight YOLO-SFCB model, which significantly reduced the complexity and computational cost of the model. The experimental results show that the parameters, floating point operations (FLOPs), and mAP50-95 of the YOLO-SFCB model reach 2.0 M, 7.8 G, and 80.5%, respectively, while the GPU-based inference time is only 15.7 ms. Compared with the original model, parameters and FLOPs were reduced by 29% and 25%, inference time was shortened by 9.8%, and mAP50-95 increased by 0.9%. Based on the YOLO-SFCB model, OpenCV was used to extract the minimum rotation circumscribed rectangle of the stipe and pileus segmentation areas, and the stipe height, stipe diameter, pileus width, and pileus thickness were measured; the average residual is less than 0.35 mm. Finally, using the least squares method, a yield prediction model for Lentinula edodes fruiting bodies was developed. The average prediction errors for fresh weight and dry weight were controlled within 0.5 g and 0.15 g, respectively. The YOLO-SFCB model and the method for extracting phenotypic features and predicting yield of Lentinula edodes proposed in this study can help promote the development of Lentinula edodes breeding and cultivation and stabilize market supply and demand.

Stropharia rugosoannulata is a widely cultivated edible fungus with high economic and nutritional value. It is a tetrapolar heterothallic basidiomycete. The development of single nucleotide polymorphism (SNP) markers for mating-type identification holds considerable promise for enhancing breeding efficiency. In our study, one group of test crosses and three-round mating experiments from one parental strain were conducted in order to ascertain the mating type in this species. Segregation distortion in mating types was observed after single-spore isolation, which was deviated from Mendelian inheritance. The monokaryotic strain Q25 was derived from the dikaryotic mycelium S1 of S. rugosoannulata. The genome map of strain Q25 with 48.27 Mb and 14 chromosomes was constructed using genomic, transcriptomic, and high-throughput chromosome conformation capture (Hi-C) sequencing technologies. The locations of mating-type loci were identified using genomic annotation. The mating-type A locus is located in chromosome 1, with the gene sequence of β-fg, HD2, HD1, and MIP. The mating-type B locus is located in chromosome 12. It contains five pheromone receptors and five pheromone precursor genes. Two pairs of highly specific and stable primers were designed based on SNP loci in A and B mating types. A1, A2, B1, and B2 alleles were precisely distinguished with these primers, which were subsequently applied in cultivation experiments. This study lays a foundation for the precise breeding of S. rugosoannulata.

Grifola frondosa is a valuable medicinal and edible mushroom whose industrial cultivation and developmental mechanisms remain poorly understood. In this study, we systematically investigated the optimal cultivation parameters and molecular basis of fruiting body development using the white strain Gr0001+3 through integrated physiological and transcriptomic approaches. The results showed that the optimal liquid medium composition was glucose (28.5 g/L), yeast extract (11.5 g/L), and MgSO₄ (2 g/L), with a C/N ratio of 10:1. This composition achieved a mycelial biomass of 2.333 g/L via an orthogonal design. Ideal culture conditions were 100 mL/250 mL liquid volume, 10% inoculum size, and pH 4.0 in single-factor experiments. The fruiting body developmental transcriptomes were analyzed in four stages: early primordia (EP), middle primordia (MP), late primordia (LP), and mature fruiting body (FB). Principal component analysis revealed distinct transcriptional profiles, with greater similarities among later developmental stages. Differential gene expression peaked during the LP vs. FB transition. Functional enrichment (GO/KEGG) showed conserved biological processes in the MP-LP-FB transitions. Heat shock proteins (hsp_78/hsp_82) and the cAMP signaling pathway component (PKAC) were involved in fruiting body development, based on RT-qPCR. This work establishes practical cultivation parameters and offers fundamental insights into the molecular regulation of G. frondosa development, providing a comprehensive foundation for advancing the industrial production of this mushroom.

Stropharia rugosoannulata, an ecologically valuable and economically important edible mushroom, faces challenges in strain-level identification and breeding due to limited genomic resources and the lack of high-resolution molecular markers. In this study, we generated high-quality genomic data for 105 S. rugosoannulata strains and identified over 2.7 million SNPs, unveiling substantial genetic diversity within the species. Using core gene-associated multiple nucleotide polymorphism (cgMNP) markers, we developed an efficient and transferable framework for strain discrimination. The analysis revealed pronounced genetic differentiation among cultivars, clustering them into two distinct phylogenetic groups. Nucleotide diversity (π) across 83 core genes varied significantly, highlighting both highly conserved loci under purifying selection and highly variable loci potentially associated with adaptive evolution. Phylogenetic analysis of the most variable gene, Phosphatidate cytidylyltransferase mitochondrial, identified 865 SNPs, enabling precise differentiation of all 85 cultivars. Our findings underscore the utility of cgMNP markers in addressing challenges posed by horizontal gene transfer and phylogenetic noise, demonstrating their robustness in cross-species applications. By providing insights into genetic diversity, evolutionary dynamics, and marker utility, this study establishes a foundation for advancing breeding programs, conservation strategies, and functional genomics in S. rugosoannulata. Furthermore, the adaptability of cgMNP markers offers a universal tool for high-resolution strain identification across diverse fungal taxa, contributing to broader fungal phylogenomics and applied mycology.

Introduction: The crown clade is one of two major groups in the Russula subg. Russula.Methods/material: An analysis of Chinese samples was performed based on the morphology, internal transcribed spacer (ITS) sequences, and multi-gene phylogenies of 28S nrLSU, 16S mtSSU, rpb1, rpb2, and tef1-α.Results: The results supported the independence of six new species: Russula alboflava (sect. Amethystinae), R. chrysantha (subsect. Chamaeleontinae), R. liyui (subsect. Laricinae), R. lutescens (subsect. Olivaceinae), R. paraxerampelina, and R. prunicolor (subsect. Xerampelinae) from Fagaceae forest habitats. Subsect. Alboflavinae was newly proposed in sect. Amethystinae. Members of the new subsection include R. alboflava, R. burlinghamiae, and possibly R. ballouii.Discussion: Our analyses also supported the claim that two species of R. fulvograminea (subsect. Laricinae) and R. subrubens (subsect. Xerampelinae) have a Eurasian distribution. The habitat and primary hosts of the main phylogenetic clades within related subsections were summarized and discussed.