Sergio Casella

Acidogenic fermentation of organic wastes represents a strategic platform for the co-production of H₂, CO₂, and volatile fatty acids (VFAs), which are potential key intermediates for cost-effective polyhydroxyalkanoate (PHAs) biosynthesis. This typically relies on carbon sources that are too expensive and hinder the commercialization of PHAs. This study provides metagenomic insights into the microbial dynamics underpinning the acidogenic conversion of waste melon under increasing organic loading rates (OLRs). Metabarcoding revealed that Megasphaera dominated the community, with its abundance rising markedly from 5 to 20 gCOD/L, accompanied by relevant contributions from Solobacterium, Prevotella, and Clostridium. These taxa were associated with the formation of acetic, propionic, and butyric acids and with enhanced hydrogenogenesis. Higher OLRs, up to 20 gCOD/L, promoted hydrogen-producing species while suppressing lactic acid bacteria, thereby improving H₂ and VFAs yields up to 26.7% v/v and 13 gCOD/L, respectively. By linking microbial shifts to metabolic outputs, this work advances the understanding of acidogenic pathways essential for integrating dark fermentation-derived H₂, CO₂, and VFAs into sustainable PHAs production systems.

Wine production generates significant quantities of by-products each year, among which surplus grape must is notable for its high content of fermentable sugars, organic acids, and polyphenols. As wine consumption declines and grape must surpluses grow, identifying sustainable valorization strategies becomes increasingly critical. This study investigates for the first time the potential use of red and white grape musts as substrates for polyhydroxyalkanoates (PHAs) production by two well-characterized bacterial strains, Cupriavidus necator DSM 545 and Hydrogenophaga pseudoflava DSM 1034, under both batch and fed-batch fermentation regimes. Both musts supported microbial growth and PHAs accumulation. In batch cultures, C. necator DSM 545 achieved a PHB content of up to 61.5% of cell dry weight (CDW), while H. pseudoflava DSM 1034 reached 67.9% PHB on grape must, with yields and biomass comparable to or exceeding those obtained with synthetic sugar-based media. Under fed-batch conditions with red must, C. necator DSM 545 sustained growth and PHB production across multiple feeding feeding periods, outperforming the control medium. Conversely, H. pseudoflava DSM 1034 displayed initial growth but failed to increase biomass over time, suggesting that this strain may be poorly suited for use in fed-bacth-based applications, likely due to nutrient depletion or the accumulation of inhibitory compounds. Overall, these results proved that grape musts are promising feedstocks for sustainable PHAs production. Their integration into circular economy frameworks offers a valuable opportunity for waste recovery and the development of bioplastics within the agri-food industry, especially in light of the increasing grape must surpluses recently experienced worldwide.

Cocoa pod husks (CPH) and cocoa bean shells (CBS) are the main by-products of the cocoa industry and a source of bioactive compounds. These residues are not completely used and thrown in the fields without any treatment, causing environmental problems. Looking for a holistic valorization, the aim of this work was first to deeply characterize CPH and CBS in their chemical composition, amino acid, and fatty acid profiles, as well as their application as antioxidants. CBS had a high level of protein (17.98% DM) and lipids (16.24% DM) compared with CPH (4.79 and 0.35% DM respectively). Glutamic acid and aspartic acid were the predominant amino acids. The total phenolic compounds (TPC) detected in the ethanolic extracts of CPH and CBS were similar to pyrogallol as the main detected polyphenol (72.57 mg/L). CBS ethanolic extract showed a higher antioxidant activity than CPH. Both extracts increased the oxidation stability of soybean oil by 48% (CPH) and 32% (CBS). In addition, alkaline pretreatment of CPH was found suitable for the release of 15.52 ± 0.78 g glucose/L after subsequent saccharification with the commercial enzyme Cellic^®. CTec2. Alkaline hydrolyzed and saccharified CPH (Ahs-CPH) was assessed for the first time to obtain polyhydroxy alkanoate (PHAs) and bioethanol. Ahs-CPH allowed the growth of both Cupriavidus necator DSM 545 and Saccharomyces cerevisiae Fm17, well-known as PHA- and bioethanol-producing microbes, respectively. The obtained results suggest that such agricultural wastes have interesting characteristics with new potential industrial uses that could be a better alternative for the utilization of biomass generated as million tons of waste annually.

Due to their long domestication time course, many industrial Saccharomyces cerevisiae strains are adopted in numerous processes mostly for historical reasons instead of scientific and technological needs. As such, there is still significant room for improvement for industrial yeast strains relying on yeast biodiversity. This paper strives to regenerate biodiversity with the innovative application of classic genetic methods to already available yeast strains. Extensive sporulation was indeed applied to three different yeast strains, specifically selected for their different origins as well as backgrounds, with the aim of clarifying how new variability was generated. A novel and easy method to obtain mono-spore colonies was specifically developed, and, to reveal the extent of the generated variability, no selection after sporulation was introduced. The obtained progenies were then tested for their growth in defined mediums with high stressor levels. A considerable and strain-specific increase in both phenotypic and metabolomic variability was assessed, and a few mono-spore colonies were found to be of great interest for their future exploitation in selected industrial processes.

Traditional plastics represent a tremendous threat to the environment because of increases in polluting manufacturing as well as their very extended degradation time. Polyhydroxyalkanoates (PHAs) are polymers with similar performance to plastic but are compostable and synthesizable from renewable sources and therefore could be a replacement for fossil-based plastics. However, their production costs are still too high, thus demanding the investigation of new and cheap substrates. In this sense, agricultural wastes are attractive because they are inexpensive and largely available. Specifically, fruit and vegetables are rich in sugars that could be fermented into PHAs. In this work two strains, Cupriavidus necator DSM 545 and Hydrogenophaga pseudoflava DSM 1034, well-known PHA-producing microbes, were screened for their ability to grow and accumulate PHAs. Ten different fruit and vegetable processing waste streams, never before reported in combination with these strains, were tested. Residues from red apple and melon were found to be the most suitable feedstocks for PHA production. Under specific selected conditions, C. necator DSM 545 accumulated up to 7.4 and 4.3 g/L of 3-hydroxybutyrate (3HB) from red apple and melon, respectively. Copolymer production was also obtained from melon. These results confirm the attractiveness of food processing waste as a promising candidate for PHA production. Ultimately, these novel substrates draw attention for future studies on process optimization and upscaling with C. necator.