Safra Altman

Groundwater-obligate taxa (stygobionts) exhibit variable degrees of habitat specialization, ranging from those restricted to single micro-habitats to generalists occurring in a broad range of habitat types. The karstic Edwards Aquifer is the most biodiverse and well-studied groundwater habitat in the continental United States, but some Edwards Aquifer-associated species also occupy the hyporheic zone of rivers downstream from karst. The goals of this research were to 1) assess the potential of the off-karst hyporheic zone as habitat for ‘karst’ species and 2) to determine how stygobiont richness, diversity, and abundance related to distance from karst in the hyporheic zone of a spring-dominated river system. We enumerated stygobionts and quantified environmental characteristics for 55 samples from 11 sites in the San Marcos River between 3 and 140 river kilometers downstream from the rivers’ spring source. Linear mixed effects models and variance partitioning were used to investigate relationships between stygobiont assemblage metrics and environmental parameters (distance from karst, temperature, dissolved oxygen, and hydraulic conductivity). Stygobiont richness and diversity were significantly affected by distance from karst. Stygobiont richness and abundance were significantly affected by hydraulic conductivity. In richness and diversity models, predictive power was low, and additional environmental variables were significant in all models. This study demonstrates that stygobiont communities in the hyporheic zone can be structured by both local environmental conditions, via habitat filtering, and to a lesser extent, by spatial effects (i.e., proximity to source populations in adjacent aquifers). Furthermore, habitat specificity is poorly characterized for stygobiont taxa, inhibiting effective conservation planning and implementation.

Background: Shallow, tropical coral reefs face compounding threats from climate change, habitat degradation due to coastal development and pollution, impacts from storms and sea-level rise, and pulse disturbances like blast fishing, mining, dredging, and ship groundings that reduce reef height and complexity. One approach toward restoring coral reef physical structure from such impacts is deploying built structures of artificial, natural, or hybrid (both artificial and natural) origin. Built structures range from designed modules and repurposed materials to underwater sculptures and intentionally placed natural rocks. Restoration practitioners and coastal managers increasingly consider incorporating – and in many cases have already begun to incorporate – built structures into coral reef-related applications, yet synthesized evidence on the ecological (coral-related; e.g., coral growth, coral survival) and physical performance of built structures in coral ecosystems across a variety of contexts (e.g., restoration, coastal protection, mitigation, tourism) is not readily available to guide decisions. To help fill this gap and inform management decisions, we systematically mapped the global distribution and abundance of published evidence on the ecological (coral-related) and physical performance of built structure interventions in shallow (≤ 30 m), tropical (35°N to 35°S) coral ecosystems. Methods: To identify potentially relevant articles, we used predefined and tested strategies to search two indexing platforms, one bibliographic database, two open discovery citation indexes, one web-based search engine, one novel literature discovery tool, 19 organizational websites, and information requested from stakeholders. Discovered articles were screened according to preset eligibility criteria first by title and abstract and second by full text. Articles included during full text screening were coded to extract metadata following a predefined framework. We analyzed and visualized the evidence base to answer our primary and secondary research questions and to identify knowledge clusters and gaps. Findings are reported in a narrative synthesis. Results: Our search discovered > 20,000 potentially relevant unique articles, of which 258 were included in the systematic map. The evidence base spans 50 countries, and the volume of evidence increased over the past five decades. Built structures were most commonly installed for coral restoration (61%) or coastal protection (12%). Structures were predominately characterized as artificial (87%), with fewer hybrid or natural interventions. Evidence clusters existed for intentionally designed artificial structures and outcomes associated with coral-related ecological performance, including coral mortality, growth, recruitment, cover, and diversity. Pronounced evidence gaps occurred at the intersection of several ecological coral-related performance outcomes (e.g., connectivity, microbiome) across all types of built structures; gaps also existed across most ecological coral-related outcomes for artwork and repurposed artificial structures. Physical performance of built structures was most frequently evaluated for outcomes related to waves (n = 14) and sediment and morphology (n = 11) with pervasive evidence gaps across other outcomes like storm surge and water level. Conclusions: While the systematic map highlighted several evidence clusters, it also revealed pronounced evidence gaps surrounding the coral-related ecological and physical performance of built structures in coral ecosystems. The compiled evidence base will help inform policy, management, and future consideration of built structures in reef-related applications, including habitat restoration, environmental mitigation, and coastal protection. Map findings also point to promising future research avenues, such as investigating seascape-scale ecological effects of and the physical performance of built structures.

Background: Shallow, tropical coral reefs face compounding threats from habitat degradation due to coastal development and pollution, impacts from storms and sea-level rise, and pulse disturbances like blast fishing, mining, dredging, and ship groundings that reduce coral reefs’ height and variability. One approach toward restoring coral reef structure from these threats is deploying built structures. Built structures range from engineered modules and repurposed materials to underwater sculptures and intentionally placed natural rocks. Restoration practitioners and coastal managers increasingly consider incorporating built structures, including nature-based solutions, into coral reef-related applications. Yet, synthesized evidence on the ecological and physical performance of built structure interventions across a variety of contexts (e.g., restoration, coastal protection, mitigation, tourism) is not readily available to guide decisions. To help inform management decisions, here we aim to document the global evidence base on the ecological and physical performance of built structures in shallow (≤ 30 m) tropical (35° N to 35° S latitude) coral ecosystems. The collated evidence base on use cases and associated ecological and physical outcomes of built structure interventions can help inform future consideration of built structures in reef restoration design, siting, and implementation. Method: To discover evidence on the performance of built structures in coral reef-related applications, such as restoration, mitigation, and coastal protection, primary literature will be searched across indexing platforms, bibliographic databases, open discovery citation indexes, a web-based search engine, a novel literature discovery tool, and organizational websites. The geographic scope of the search is global, and there is no limitation to temporal scope. Primary literature will be screened first at the level of title and abstract and then at the full text level against defined eligibility criteria for the population, intervention, study type, and outcomes of interest. Metadata will be extracted from studies that pass both screening levels. The resulting data will be analyzed to determine the distribution and abundance of evidence. Results will be made publicly available and reported in a systematic map that includes a narrative description, identifies evidence clusters and gaps, and outlines future research directions on the use of built structures in coral reef-related applications.