Costanza Piccoli

Historically, herpetological research in Madagascar has largely overlooked small forest fragments outside the country protected area network. Despite substantial declines in species diversity compared to large continuous forests, these fragments continue to sustain diverse herpetological communities and frequently harbour microendemic species. We describe a new gecko belonging to the genus Paragehyra, apparently microendemic to small and isolated forest fragments surrounding the Andringitra Massif in south-eastern Madagascar. Paragehyra tsaranorosp. nov. is different from its congeneric species based on genetic distances in mitochondrial markers (16S and COI), phylogenetic position, and the lack of haplotype sharing at one nuclear locus (POMC). The new species is also distinguishable from its congeners based on a combination of 14 morphological characters. New genetic and morphological data are also provided for the sympatric P. felicitae and we propose a new assessment of its conservation status within the IUCN Red List. Paragehyra tsaranorosp. nov. and P. felicitae are mostly found in forest fragments managed by local communities (community-managed reserves) outside legally protected areas. This study highlights the importance of community-based management for the conservation of local herpetofauna, particularly in regions heavily impacted by anthropogenic pressure and largely unsuitable for forest-dwelling species. The findings emphasise the importance of conducting research on small forest fragments, as they are essential for completing the inventory of Malagasy herpetofauna.

Objective: A reliable taxonomic identification of species from molecular samples is the first step for many studies. For researchers unfamiliar with programming, running a BLAST analysis, filtering, and organizing results for hundreds of sequences through the BLAST web interface can be difficult. Additionally, sequences deposited in GenBank can have outdated taxonomic identification. The use of reliable Reference Sequences Library (RSL) containing accurate taxonomically-identified sequences facilitates this task. Pending the availability of a RSL with the user, we developed a tool that automates the molecular taxonomic identification of sequences. Results: We developed PARSID, a Python script running through the command-line that automates the routine workflow of blasting an input sequence file against the user’s RSL, and retrieves the matches with the highest percentage of identity in five steps. PARSID accepts cut-off parameters and supplementary information in a.csv file for filtering the results. The final output is visualized in a spreadsheet. We tested its functioning using 10 input sequences simulating different situations of the molecular taxonomic identification of sequences against an example RSL containing 25 sequences. Step-by-step instructions and test files are publicly available at https://github.com/kokinide/PARSID.git.

Using an integrative taxonomic approach including genetic and morphological data, we formally describe a new microendemic gecko species belonging to the Paroedura bastardi clade, previously referred to as P. bastardi D. We name this taxon currently known from Anja Reserve and Tsaranoro Valley Forest (south-central Madagascar), as P. manongavatosp. nov. The new species differs from other species of the P. bastardi clade by ≥ 12.4% uncorrected p-distance at the mitochondrial 16S rRNA gene and it forms a monophyletic group in the COI mtDNA phylogenetic tree. It lacks haplotype sharing at the nuclear KIAA1239 and CMOS genes with the other species of the same complex, including the syntopic P. rennerae. Given its limited extent of occurrence and high levels of habitat fragmentation linked to forest clearances and fires, we propose the IUCN Red List Category of Critically Endangered, based on the B1ab(iii) criterion. The conservation value of Anja Reserve and Tsaranoro Valley Forest is remarkable. Preserving the remaining deciduous forest habitat is of paramount importance to protect these narrow-range reptile species.