Eric Odle
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Eric Odle has a total of 25 co-authors. Here are the top co-authors by number of shared publications:
- Pei-Chun Lin
Feng Chia University
3 shared publications - Aleksander I. Polovian
ZebraML, Inc., Houston, TX 77043, USA
1 shared publication - Alexey V. Drobkov
Institute of Medicine and Psychology, Novosibirsk State University, 630117 Novosibirsk, Russia
1 shared publication - Alim Bashirzade
V. Zelman Institute for Medicine and Psychology, Novosibirsk State University, 630090 Novosibirsk, Russia
1 shared publication - Alisa S. Belova
Scientific Research Institute of Neuroscience and Medicine, 630090 Novosibirsk, Russia
1 shared publication - Allan V. Kalueff
Institute of Translational Biomedicine, St. Petersburg State University, 199034 St. Petersburg, Russia
1 shared publication
Latest Publications
- Open Access
- 20 December 2025
- Published by Association for Computing Machinery (ACM)
- p. 245-249
Overfitting in Music Genre Classification: Evaluating Differences Between the GTZAN and FMA Datasets
- 20 December 2025
- Published by Association for Computing Machinery (ACM)
- p. 245-249
Open AccessOverfitting in Music Genre Classification: Evaluating Differences Between the GTZAN and FMA Datasets
- Open Access
- 14 December 2024
- Published by Association for Computing Machinery (ACM)
- p. 87-94
Prototype for a Personalized Music Recommendation System Based on TL-CNN-GRU Model with 10-Fold Cross-Validation
- 14 December 2024
- Published by Association for Computing Machinery (ACM)
- p. 87-94
Open AccessPrototype for a Personalized Music Recommendation System Based on TL-CNN-GRU Model with 10-Fold Cross-Validation
- Open Access
- 19 March 2024
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 40 (4)
GINSA: an accumulator for paired locality and next-generation small ribosomal subunit sequence data
Motivation: Motivated by the challenges of decentralized genetic data spread across multiple international organizations, GINSA leverages the Global Biodiversity Information Facility infrastructure to automatically retrieve and link small ribosomal subunit sequences with locality information. Results: Testing on taxa from major organism groups demonstrates broad applicability across taxonomic levels and dataset sizes. Availability and implementation: GINSA is a freely accessible Python program under the MIT License and can be installed from PyPI via pip.
- 19 March 2024
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 40 (4)
Open AccessGINSA: an accumulator for paired locality and next-generation small ribosomal subunit sequence data
Motivation: Motivated by the challenges of decentralized genetic data spread across multiple international organizations, GINSA leverages the Global Biodiversity Information Facility infrastructure to automatically retrieve and link small ribosomal subunit sequences with locality information. Results: Testing on taxa from major organism groups demonstrates broad applicability across taxonomic levels and dataset sizes. Availability and implementation: GINSA is a freely accessible Python program under the MIT License and can be installed from PyPI via pip.
- Open Access
- 9 October 2023
- Published by MDPI AG in Electronics
- Vol. 12 (19) , 4185
Semantic Positioning Model Incorporating BERT/RoBERTa and Fuzzy Theory Achieves More Nuanced Japanese Adverb Clustering
Japanese adverbs are difficult to classify, with little progress made since the 1930s. Now in the age of large language models, linguists need a framework for lexical grouping that incorporates quantitative, evidence-based relationships rather than purely theoretical categorization. We herein address this need for the case of Japanese adverbs by developing a semantic positioning approach that incorporates large language model embeddings with fuzzy set theory to achieve empirical Japanese adverb groupings. To perform semantic positioning, we (i) obtained multi-dimensional embeddings for a list of Japanese adverbs using a BERT or RoBERTa model pre-trained on Japanese text, (ii) reduced the dimensionality of each embedding by principle component analysis (PCA), (iii) mapped the relative position of each adverb in a 3D plot using K-means clustering with an initial cluster count of , (iv) performed silhouette analysis to determine the optimal cluster count, (v) performed PCA and K-means clustering on the adverb embeddings again to generate 2D semantic position plots, then finally (vi) generated a centroid distance matrix. Fuzzy set theory informs our workflow at the embedding step, where the meanings of words are treated as quantifiable vague data. Our results suggest that Japanese adverbs optimally cluster into rather than groups following silhouette analysis. We also observe a lack of consistency between adverb semantic positions and conventional classification. Ultimately, 3D/2D semantic position plots and centroid distance matrices were simple to generate and did not require special hardware. Our novel approach offers advantages over conventional adverb classification, including an intuitive visualization of semantic relationships in the form of semantic position plots, as well as a quantitative clustering “fingerprint” for Japanese adverbs that express vague language data as a centroid distance matrix.- 9 October 2023
- Published by MDPI AG in Electronics
- Vol. 12 (19) , 4185
Open AccessSemantic Positioning Model Incorporating BERT/RoBERTa and Fuzzy Theory Achieves More Nuanced Japanese Adverb Clustering
Japanese adverbs are difficult to classify, with little progress made since the 1930s. Now in the age of large language models, linguists need a framework for lexical grouping that incorporates quantitative, evidence-based relationships rather than purely theoretical categorization. We herein address this need for the case of Japanese adverbs by developing a semantic positioning approach that incorporates large language model embeddings with fuzzy set theory to achieve empirical Japanese adverb groupings. To perform semantic positioning, we (i) obtained multi-dimensional embeddings for a list of Japanese adverbs using a BERT or RoBERTa model pre-trained on Japanese text, (ii) reduced the dimensionality of each embedding by principle component analysis (PCA), (iii) mapped the relative position of each adverb in a 3D plot using K-means clustering with an initial cluster count of , (iv) performed silhouette analysis to determine the optimal cluster count, (v) performed PCA and K-means clustering on the adverb embeddings again to generate 2D semantic position plots, then finally (vi) generated a centroid distance matrix. Fuzzy set theory informs our workflow at the embedding step, where the meanings of words are treated as quantifiable vague data. Our results suggest that Japanese adverbs optimally cluster into rather than groups following silhouette analysis. We also observe a lack of consistency between adverb semantic positions and conventional classification. Ultimately, 3D/2D semantic position plots and centroid distance matrices were simple to generate and did not require special hardware. Our novel approach offers advantages over conventional adverb classification, including an intuitive visualization of semantic relationships in the form of semantic position plots, as well as a quantitative clustering “fingerprint” for Japanese adverbs that express vague language data as a centroid distance matrix. - Open Access
MPTP-Treated Zebrafish Recapitulate ‘Late-Stage’ Parkinson’s-like Cognitive Decline
The zebrafish is a promising model species in biomedical research, including neurotoxicology and neuroactive drug screening. 1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) evokes degeneration of dopaminergic neurons and is commonly used to model Parkinson’s disease (PD) in laboratory animals, including zebrafish. However, cognitive phenotypes in MPTP-evoked experimental PD models remain poorly understood. Here, we established an LD50 (292 mg/kg) for intraperitoneal MPTP administration in adult zebrafish, and report impaired spatial working memory (poorer spontaneous alternation in the Y-maze) in a PD model utilizing fish treated with 200 µg of this agent. In addition to conventional behavioral analyses, we also employed artificial intelligence (AI)-based approaches to independently and without bias characterize MPTP effects on zebrafish behavior during the Y-maze test. These analyses yielded a distinct cluster for 200-μg MPTP (vs. other) groups, suggesting that high-dose MPTP produced distinct, computationally detectable patterns of zebrafish swimming. Collectively, these findings support MPTP treatment in adult zebrafish as a late-stage experimental PD model with overt cognitive phenotypes.
Open AccessMPTP-Treated Zebrafish Recapitulate ‘Late-Stage’ Parkinson’s-like Cognitive Decline
The zebrafish is a promising model species in biomedical research, including neurotoxicology and neuroactive drug screening. 1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) evokes degeneration of dopaminergic neurons and is commonly used to model Parkinson’s disease (PD) in laboratory animals, including zebrafish. However, cognitive phenotypes in MPTP-evoked experimental PD models remain poorly understood. Here, we established an LD50 (292 mg/kg) for intraperitoneal MPTP administration in adult zebrafish, and report impaired spatial working memory (poorer spontaneous alternation in the Y-maze) in a PD model utilizing fish treated with 200 µg of this agent. In addition to conventional behavioral analyses, we also employed artificial intelligence (AI)-based approaches to independently and without bias characterize MPTP effects on zebrafish behavior during the Y-maze test. These analyses yielded a distinct cluster for 200-μg MPTP (vs. other) groups, suggesting that high-dose MPTP produced distinct, computationally detectable patterns of zebrafish swimming. Collectively, these findings support MPTP treatment in adult zebrafish as a late-stage experimental PD model with overt cognitive phenotypes.