Jaewoo Park
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Jaewoo Park has a total of 45 co-authors. Here are the top co-authors by number of shared publications:
- Ick Hoon Jin
Yonsei University
6 shared publications Dagun Oh
Department of Statistics and Data Science, Yonsei University, Seoul, Republic of Korea
5 shared publicationsHanjeong Ki
Department of Statistics and Data Science, Yonsei University, Seoul, Republic of Korea
5 shared publications- Jhoon Kim
Department of Atmospheric Sciences, Yonsei University, Seoul, South Korea
5 shared publications - Sangwook Kang
Department of Applied Statistics, Yonsei University, Seoul, South Korea
5 shared publications Seungjun Lee
Department of Statistics and Data Science, Yonsei University, Seoul, Republic of Korea
5 shared publications
Latest Publications
- 17 April 2026
- Published by Oxford University Press (OUP) in Journal of the Royal Statistical Society Series A: Statistics in Society
A spatio-temporal Dirichlet process mixture model on linear networks for crime data
Analysing crime events is crucial to understand crime dynamics, and it is largely helpful for constructing prevention policies. Point processes specified on linear networks can provide a more accurate description of crime incidents by considering the geometry of the city. We propose a spatio-temporal Dirichlet process (DP) mixture model on a linear network to analyse crime events in Valencia, Spain. We propose a Bayesian hierarchical model with a DP prior to automatically detect space-time clusters of the events and adopt a convolution kernel estimator to account for the network structure in the city. From the fitted model, we provide crime hotspot visualizations that can inform social interventions to prevent crime incidents. Furthermore, we study the relationships between the detected cluster centres and the city’s amenities, which provides an intuitive explanation of criminal contagion.
- 17 April 2026
- Published by Oxford University Press (OUP) in Journal of the Royal Statistical Society Series A: Statistics in Society
A spatio-temporal Dirichlet process mixture model on linear networks for crime data
Analysing crime events is crucial to understand crime dynamics, and it is largely helpful for constructing prevention policies. Point processes specified on linear networks can provide a more accurate description of crime incidents by considering the geometry of the city. We propose a spatio-temporal Dirichlet process (DP) mixture model on a linear network to analyse crime events in Valencia, Spain. We propose a Bayesian hierarchical model with a DP prior to automatically detect space-time clusters of the events and adopt a convolution kernel estimator to account for the network structure in the city. From the fitted model, we provide crime hotspot visualizations that can inform social interventions to prevent crime incidents. Furthermore, we study the relationships between the detected cluster centres and the city’s amenities, which provides an intuitive explanation of criminal contagion.
- Open Access
- 28 March 2025
- Published by American Geophysical Union (AGU) in Journal of Geophysical Research: Atmospheres
- Vol. 130 (7)
Using AOD and UVAI to Reduce the Uncertainties in Wildfire Emission and Air Quality Modeling
Wildfires are a major natural source of atmospheric aerosols, leading to air quality degradation and adverse human health effects. Accurate prediction of air quality effects from wildfires remains challenging due to uncertainties in fire emission estimates. To enhance the accuracy of fire emissions used in air quality forecast models, we developed a method that utilizes satellite aerosol optical depth (AOD) observations and air quality simulations to calculate dynamic emission scaling factors and improve wildfire air quality forecasts. TROPOMI (TROPOspheric Monitoring Instrument) UV Aerosol Index (UVAI) data are employed to fill AOD gaps under thick smoke using two approaches: a regression model and an artificial intelligence model. The scaling factor method was applied to NOAA blended Global Biomass Burning Emissions Product. The emission scaling factors exhibited significant variability across different fire points, highlighting the need for point‐specific scaling factors. On average, scaling factors were less than 1.0 (indicating emission overestimation) during the initial stages of fire events but exceeded 1.0 (suggesting underestimation) after 7 days of fire duration. An inverse relationship between scaling factors and fire radiative power (FRP) was observed, with emission underestimation for low‐intensity fires (FRP 500 MW). The improved fire emissions were employed in the air quality model for the 2020 US Gigafire event. Utilizing emission scaling factors reduced model bias, increased the correlation and hit rate of PM2.5 exceedance prediction, demonstrating the potential of using emission scaling factors for improving air quality forecasting during wildfire events.
- 28 March 2025
- Published by American Geophysical Union (AGU) in Journal of Geophysical Research: Atmospheres
- Vol. 130 (7)
Open AccessUsing AOD and UVAI to Reduce the Uncertainties in Wildfire Emission and Air Quality Modeling
Wildfires are a major natural source of atmospheric aerosols, leading to air quality degradation and adverse human health effects. Accurate prediction of air quality effects from wildfires remains challenging due to uncertainties in fire emission estimates. To enhance the accuracy of fire emissions used in air quality forecast models, we developed a method that utilizes satellite aerosol optical depth (AOD) observations and air quality simulations to calculate dynamic emission scaling factors and improve wildfire air quality forecasts. TROPOMI (TROPOspheric Monitoring Instrument) UV Aerosol Index (UVAI) data are employed to fill AOD gaps under thick smoke using two approaches: a regression model and an artificial intelligence model. The scaling factor method was applied to NOAA blended Global Biomass Burning Emissions Product. The emission scaling factors exhibited significant variability across different fire points, highlighting the need for point‐specific scaling factors. On average, scaling factors were less than 1.0 (indicating emission overestimation) during the initial stages of fire events but exceeded 1.0 (suggesting underestimation) after 7 days of fire duration. An inverse relationship between scaling factors and fire radiative power (FRP) was observed, with emission underestimation for low‐intensity fires (FRP 500 MW). The improved fire emissions were employed in the air quality model for the 2020 US Gigafire event. Utilizing emission scaling factors reduced model bias, increased the correlation and hit rate of PM2.5 exceedance prediction, demonstrating the potential of using emission scaling factors for improving air quality forecasting during wildfire events.
- Open Access
- 1 January 2025
- Published by Institute of Mathematical Statistics in Bayesian Analysis
- Vol. -1 (-1) , 1-29
Bayesian Function-on-Function Regression for Spatial Functional Data
Spatial functional data arise in many settings, such as particulate matter curves observed at monitoring stations and age population curves at each areal unit. Most existing functional regression models have limited applicability because they do not consider spatial correlations. Although functional kriging methods can predict the curves at unobserved spatial locations, they are based on variogram fittings rather than constructing hierarchical statistical models. In this manuscript, we propose a Bayesian framework for spatial function-on-function regression that can carry out parameter estimations and predictions. However, the proposed model has computational and inferential challenges because the model needs to account for within and between-curve dependencies. Furthermore, high-dimensional and spatially correlated parameters can lead to the slow mixing of Markov chain Monte Carlo algorithms. To address these issues, we first utilize a basis transformation approach to simplify the covariance and apply projection methods for dimension reduction. We also develop a simultaneous band score for the proposed model to detect the significant region in the regression function. We apply our method to both areal and point-level spatial functional data, showing the proposed method is computationally efficient and provides accurate estimations and predictions.
- 1 January 2025
- Published by Institute of Mathematical Statistics in Bayesian Analysis
- Vol. -1 (-1) , 1-29
Open AccessBayesian Function-on-Function Regression for Spatial Functional Data
Spatial functional data arise in many settings, such as particulate matter curves observed at monitoring stations and age population curves at each areal unit. Most existing functional regression models have limited applicability because they do not consider spatial correlations. Although functional kriging methods can predict the curves at unobserved spatial locations, they are based on variogram fittings rather than constructing hierarchical statistical models. In this manuscript, we propose a Bayesian framework for spatial function-on-function regression that can carry out parameter estimations and predictions. However, the proposed model has computational and inferential challenges because the model needs to account for within and between-curve dependencies. Furthermore, high-dimensional and spatially correlated parameters can lead to the slow mixing of Markov chain Monte Carlo algorithms. To address these issues, we first utilize a basis transformation approach to simplify the covariance and apply projection methods for dimension reduction. We also develop a simultaneous band score for the proposed model to detect the significant region in the regression function. We apply our method to both areal and point-level spatial functional data, showing the proposed method is computationally efficient and provides accurate estimations and predictions.
- Open Access
- 6 September 2024
- Published by Copernicus GmbH in Atmospheric Measurement Techniques
- Vol. 17 (17) , 5221-5241
Improved mean field estimates from the Geostationary Environment Monitoring Spectrometer (GEMS) Level-3 aerosol optical depth (L3 AOD) product: using spatiotemporal variability
This study presents advancements in the processing of satellite remote sensing data, focusing mainly on aerosol optical depth (AOD) retrievals from the Geostationary Environment Monitoring Spectrometer (GEMS). The transformation of Level-2 (L2) data, which includes atmospheric-state retrievals, into higher-quality Level-3 (L3) data is crucial in remote sensing. Our contributions lie in two novel improvements to the processing algorithm. First, we improve the inverse-distance-weighting algorithm by incorporating quality flag information into the weight calculation. By assigning weights that are inversely proportional to the number of unreliable grids, the method can provide more accurate L3 products. We validate this approach through simulation studies and apply it to GEMS AOD data across various regions and wavelengths. The use of quality flags in the algorithm can provide a more accurate analysis of remote sensing. Second, we employ a spatiotemporal merging method to address both spatial and temporal variability in AOD data, a departure from previous approaches that solely focused on spatial variability. Our method considers temporal variations spanning previous time intervals. Furthermore, the computed mean fields show similar spatiotemporal patterns to previous studies, confirming their ability to capture real-world phenomena. Lastly, utilizing this procedure, we compute the mean field estimates for GEMS AOD data, which can provide a deeper understanding of the impact of aerosols on climate change and public health.
- 6 September 2024
- Published by Copernicus GmbH in Atmospheric Measurement Techniques
- Vol. 17 (17) , 5221-5241
Open AccessImproved mean field estimates from the Geostationary Environment Monitoring Spectrometer (GEMS) Level-3 aerosol optical depth (L3 AOD) product: using spatiotemporal variability
This study presents advancements in the processing of satellite remote sensing data, focusing mainly on aerosol optical depth (AOD) retrievals from the Geostationary Environment Monitoring Spectrometer (GEMS). The transformation of Level-2 (L2) data, which includes atmospheric-state retrievals, into higher-quality Level-3 (L3) data is crucial in remote sensing. Our contributions lie in two novel improvements to the processing algorithm. First, we improve the inverse-distance-weighting algorithm by incorporating quality flag information into the weight calculation. By assigning weights that are inversely proportional to the number of unreliable grids, the method can provide more accurate L3 products. We validate this approach through simulation studies and apply it to GEMS AOD data across various regions and wavelengths. The use of quality flags in the algorithm can provide a more accurate analysis of remote sensing. Second, we employ a spatiotemporal merging method to address both spatial and temporal variability in AOD data, a departure from previous approaches that solely focused on spatial variability. Our method considers temporal variations spanning previous time intervals. Furthermore, the computed mean fields show similar spatiotemporal patterns to previous studies, confirming their ability to capture real-world phenomena. Lastly, utilizing this procedure, we compute the mean field estimates for GEMS AOD data, which can provide a deeper understanding of the impact of aerosols on climate change and public health.
- 2 September 2024
- Published by Oxford University Press (OUP) in Journal of the Royal Statistical Society Series A: Statistics in Society
- Vol. 188 (3) , 935-952
Impacts of innovation school system in Korea: a latent space item response model with Neyman–Scott point process
South Korea’s educational system has faced criticism for its lack of focus on critical thinking and creativity, resulting in high levels of stress and anxiety among students. As part of the government’s effort to improve the educational system, the innovation school system was introduced in 2009, which aims to develop students’ creativity as well as their non-cognitive skills. To better understand the differences between innovation and regular school systems in South Korea, we propose a novel method that combines the latent space item response model with the Neyman–Scott point process model. Our method accounts for the heterogeneity of items and students, captures relationships between respondents and items, and identifies item and student clusters that can provide a comprehensive understanding of students’ behaviours/perceptions on non-cognitive outcomes. Our analysis reveals that students in the innovation school system show a higher sense of citizenship, while those in the regular school system tend to associate confidence in appearance with social ability. A comparison with exploratory item factor analysis highlights our method’s advantages in terms of uncertainty quantification of the clustering process and more detailed and nuanced clustering results. Our method is made available to an existing R package, lsirm12pl.
- 2 September 2024
- Published by Oxford University Press (OUP) in Journal of the Royal Statistical Society Series A: Statistics in Society
- Vol. 188 (3) , 935-952
Impacts of innovation school system in Korea: a latent space item response model with Neyman–Scott point process
South Korea’s educational system has faced criticism for its lack of focus on critical thinking and creativity, resulting in high levels of stress and anxiety among students. As part of the government’s effort to improve the educational system, the innovation school system was introduced in 2009, which aims to develop students’ creativity as well as their non-cognitive skills. To better understand the differences between innovation and regular school systems in South Korea, we propose a novel method that combines the latent space item response model with the Neyman–Scott point process model. Our method accounts for the heterogeneity of items and students, captures relationships between respondents and items, and identifies item and student clusters that can provide a comprehensive understanding of students’ behaviours/perceptions on non-cognitive outcomes. Our analysis reveals that students in the innovation school system show a higher sense of citizenship, while those in the regular school system tend to associate confidence in appearance with social ability. A comparison with exploratory item factor analysis highlights our method’s advantages in terms of uncertainty quantification of the clustering process and more detailed and nuanced clustering results. Our method is made available to an existing R package, lsirm12pl.
- Open Access
- 1 June 2024
- Published by Institute of Mathematical Statistics in Bayesian Analysis
- Vol. 19 (2) , 1-32
Fast Bayesian Functional Regression for Non-Gaussian Spatial Data
Functional generalized linear models (FGLM) have been widely used to study the relations between non-Gaussian response and functional covariates. However, most existing works for FGLM assume independence among observations and therefore they are of limited applicability for correlated data. A particularly important example is spatial functional data, where we observe functions over spatial domains, such as the age population curve or temperature curve at each areal unit. In this paper, we extend FGLM by incorporating spatial random effects. Especially, we study the relationship between the non-Gaussian response variable and functional covariates that are spatially observed. However, such model has computational and inferential challenges. The high-dimensional spatial random effects cause the slow mixing of Markov chain Monte Carlo (MCMC) algorithms. Furthermore, spatial confounding can lead to bias in parameter estimates and inflate their variances. To address these issues, we propose an efficient Bayesian method using a sparse reparameterization of high-dimensional random effects. We also study the average coverage probabilities of the credible intervals of functional parameters. We apply our methods to simulated and real data examples, including malaria incidence data and US COVID-19 data. The proposed method is fast while providing accurate functional estimates.
- 1 June 2024
- Published by Institute of Mathematical Statistics in Bayesian Analysis
- Vol. 19 (2) , 1-32
Open AccessFast Bayesian Functional Regression for Non-Gaussian Spatial Data
Functional generalized linear models (FGLM) have been widely used to study the relations between non-Gaussian response and functional covariates. However, most existing works for FGLM assume independence among observations and therefore they are of limited applicability for correlated data. A particularly important example is spatial functional data, where we observe functions over spatial domains, such as the age population curve or temperature curve at each areal unit. In this paper, we extend FGLM by incorporating spatial random effects. Especially, we study the relationship between the non-Gaussian response variable and functional covariates that are spatially observed. However, such model has computational and inferential challenges. The high-dimensional spatial random effects cause the slow mixing of Markov chain Monte Carlo (MCMC) algorithms. Furthermore, spatial confounding can lead to bias in parameter estimates and inflate their variances. To address these issues, we propose an efficient Bayesian method using a sparse reparameterization of high-dimensional random effects. We also study the average coverage probabilities of the credible intervals of functional parameters. We apply our methods to simulated and real data examples, including malaria incidence data and US COVID-19 data. The proposed method is fast while providing accurate functional estimates.
- Open Access
- 17 May 2024
- Published by Copernicus GmbH
- Vol. 2024, 1-27
Reply on RC1
This study presents advancements in the processing of satellite remote sensing data, focusing mainly on Aerosol Optical Depth (AOD) retrievals from the Geostationary Environment Monitoring Spectrometer (GEMS). The transformation of Level 2 (L2) data, which includes atmospheric state retrievals, into higher-quality Level 3 (L3) data is crucial in remote sensing. Our contributions lie in two novel improvements to the processing algorithm. First, we improve the inverse distance weighting algorithm by incorporating quality flag information into the weight calculation. By assigning weights inversely proportional to the number of unreliable grids, the method can provide more accurate L3 products. We validate this approach through simulation studies and apply it to GEMS AOD data across various regions and wavelengths. The use of the quality flags in the algorithm can provide a more accurate analysis in remote sensing. Second, we employ a spatio-temporal merging method to address both spatial and temporal variability in AOD data, a departure from previous approaches that solely focused on spatial variability. Our method considers temporal variations spanning previous time intervals. Furthermore, the computed mean fields show similar spatio-temporal patterns to the previous studies, confirming that they can capture real-world phenomena. Lastly, utilizing this procedure, we compute the mean field estimates for GEMS AOD data, which can provide a deeper understanding of the impact of aerosols on climate change and public health.
- 17 May 2024
- Published by Copernicus GmbH
- Vol. 2024, 1-27
Open AccessReply on RC1
This study presents advancements in the processing of satellite remote sensing data, focusing mainly on Aerosol Optical Depth (AOD) retrievals from the Geostationary Environment Monitoring Spectrometer (GEMS). The transformation of Level 2 (L2) data, which includes atmospheric state retrievals, into higher-quality Level 3 (L3) data is crucial in remote sensing. Our contributions lie in two novel improvements to the processing algorithm. First, we improve the inverse distance weighting algorithm by incorporating quality flag information into the weight calculation. By assigning weights inversely proportional to the number of unreliable grids, the method can provide more accurate L3 products. We validate this approach through simulation studies and apply it to GEMS AOD data across various regions and wavelengths. The use of the quality flags in the algorithm can provide a more accurate analysis in remote sensing. Second, we employ a spatio-temporal merging method to address both spatial and temporal variability in AOD data, a departure from previous approaches that solely focused on spatial variability. Our method considers temporal variations spanning previous time intervals. Furthermore, the computed mean fields show similar spatio-temporal patterns to the previous studies, confirming that they can capture real-world phenomena. Lastly, utilizing this procedure, we compute the mean field estimates for GEMS AOD data, which can provide a deeper understanding of the impact of aerosols on climate change and public health.
- Open Access
- 17 May 2024
- Published by Copernicus GmbH
- Vol. 2024, 1-27
Reply on RC2
This study presents advancements in the processing of satellite remote sensing data, focusing mainly on Aerosol Optical Depth (AOD) retrievals from the Geostationary Environment Monitoring Spectrometer (GEMS). The transformation of Level 2 (L2) data, which includes atmospheric state retrievals, into higher-quality Level 3 (L3) data is crucial in remote sensing. Our contributions lie in two novel improvements to the processing algorithm. First, we improve the inverse distance weighting algorithm by incorporating quality flag information into the weight calculation. By assigning weights inversely proportional to the number of unreliable grids, the method can provide more accurate L3 products. We validate this approach through simulation studies and apply it to GEMS AOD data across various regions and wavelengths. The use of the quality flags in the algorithm can provide a more accurate analysis in remote sensing. Second, we employ a spatio-temporal merging method to address both spatial and temporal variability in AOD data, a departure from previous approaches that solely focused on spatial variability. Our method considers temporal variations spanning previous time intervals. Furthermore, the computed mean fields show similar spatio-temporal patterns to the previous studies, confirming that they can capture real-world phenomena. Lastly, utilizing this procedure, we compute the mean field estimates for GEMS AOD data, which can provide a deeper understanding of the impact of aerosols on climate change and public health.
- 17 May 2024
- Published by Copernicus GmbH
- Vol. 2024, 1-27
Open AccessReply on RC2
This study presents advancements in the processing of satellite remote sensing data, focusing mainly on Aerosol Optical Depth (AOD) retrievals from the Geostationary Environment Monitoring Spectrometer (GEMS). The transformation of Level 2 (L2) data, which includes atmospheric state retrievals, into higher-quality Level 3 (L3) data is crucial in remote sensing. Our contributions lie in two novel improvements to the processing algorithm. First, we improve the inverse distance weighting algorithm by incorporating quality flag information into the weight calculation. By assigning weights inversely proportional to the number of unreliable grids, the method can provide more accurate L3 products. We validate this approach through simulation studies and apply it to GEMS AOD data across various regions and wavelengths. The use of the quality flags in the algorithm can provide a more accurate analysis in remote sensing. Second, we employ a spatio-temporal merging method to address both spatial and temporal variability in AOD data, a departure from previous approaches that solely focused on spatial variability. Our method considers temporal variations spanning previous time intervals. Furthermore, the computed mean fields show similar spatio-temporal patterns to the previous studies, confirming that they can capture real-world phenomena. Lastly, utilizing this procedure, we compute the mean field estimates for GEMS AOD data, which can provide a deeper understanding of the impact of aerosols on climate change and public health.
- Open Access
- 17 April 2024
- Published by Copernicus GmbH
- Vol. 2024, 1-27
Comment on egusphere-2024-604
This study presents advancements in the processing of satellite remote sensing data, focusing mainly on Aerosol Optical Depth (AOD) retrievals from the Geostationary Environment Monitoring Spectrometer (GEMS). The transformation of Level 2 (L2) data, which includes atmospheric state retrievals, into higher-quality Level 3 (L3) data is crucial in remote sensing. Our contributions lie in two novel improvements to the processing algorithm. First, we improve the inverse distance weighting algorithm by incorporating quality flag information into the weight calculation. By assigning weights inversely proportional to the number of unreliable grids, the method can provide more accurate L3 products. We validate this approach through simulation studies and apply it to GEMS AOD data across various regions and wavelengths. The use of the quality flags in the algorithm can provide a more accurate analysis in remote sensing. Second, we employ a spatio-temporal merging method to address both spatial and temporal variability in AOD data, a departure from previous approaches that solely focused on spatial variability. Our method considers temporal variations spanning previous time intervals. Furthermore, the computed mean fields show similar spatio-temporal patterns to the previous studies, confirming that they can capture real-world phenomena. Lastly, utilizing this procedure, we compute the mean field estimates for GEMS AOD data, which can provide a deeper understanding of the impact of aerosols on climate change and public health.
- 17 April 2024
- Published by Copernicus GmbH
- Vol. 2024, 1-27
Open AccessComment on egusphere-2024-604
This study presents advancements in the processing of satellite remote sensing data, focusing mainly on Aerosol Optical Depth (AOD) retrievals from the Geostationary Environment Monitoring Spectrometer (GEMS). The transformation of Level 2 (L2) data, which includes atmospheric state retrievals, into higher-quality Level 3 (L3) data is crucial in remote sensing. Our contributions lie in two novel improvements to the processing algorithm. First, we improve the inverse distance weighting algorithm by incorporating quality flag information into the weight calculation. By assigning weights inversely proportional to the number of unreliable grids, the method can provide more accurate L3 products. We validate this approach through simulation studies and apply it to GEMS AOD data across various regions and wavelengths. The use of the quality flags in the algorithm can provide a more accurate analysis in remote sensing. Second, we employ a spatio-temporal merging method to address both spatial and temporal variability in AOD data, a departure from previous approaches that solely focused on spatial variability. Our method considers temporal variations spanning previous time intervals. Furthermore, the computed mean fields show similar spatio-temporal patterns to the previous studies, confirming that they can capture real-world phenomena. Lastly, utilizing this procedure, we compute the mean field estimates for GEMS AOD data, which can provide a deeper understanding of the impact of aerosols on climate change and public health.
- 27 March 2024
- Published by Oxford University Press (OUP) in Biometrics
- Vol. 80 (2)
A Bayesian convolutional neural network-based generalized linear model
Convolutional neural networks (CNNs) provide flexible function approximations for a wide variety of applications when the input variables are in the form of images or spatial data. Although CNNs often outperform traditional statistical models in prediction accuracy, statistical inference, such as estimating the effects of covariates and quantifying the prediction uncertainty, is not trivial due to the highly complicated model structure and overparameterization. To address this challenge, we propose a new Bayesian approach by embedding CNNs within the generalized linear models (GLMs) framework. We use extracted nodes from the last hidden layer of CNN with Monte Carlo (MC) dropout as informative covariates in GLM. This improves accuracy in prediction and regression coefficient inference, allowing for the interpretation of coefficients and uncertainty quantification. By fitting ensemble GLMs across multiple realizations from MC dropout, we can account for uncertainties in extracting the features. We apply our methods to biological and epidemiological problems, which have both high-dimensional correlated inputs and vector covariates. Specifically, we consider malaria incidence data, brain tumor image data, and fMRI data. By extracting information from correlated inputs, the proposed method can provide an interpretable Bayesian analysis. The algorithm can be broadly applicable to image regressions or correlated data analysis by enabling accurate Bayesian inference quickly.
- 27 March 2024
- Published by Oxford University Press (OUP) in Biometrics
- Vol. 80 (2)
A Bayesian convolutional neural network-based generalized linear model
Convolutional neural networks (CNNs) provide flexible function approximations for a wide variety of applications when the input variables are in the form of images or spatial data. Although CNNs often outperform traditional statistical models in prediction accuracy, statistical inference, such as estimating the effects of covariates and quantifying the prediction uncertainty, is not trivial due to the highly complicated model structure and overparameterization. To address this challenge, we propose a new Bayesian approach by embedding CNNs within the generalized linear models (GLMs) framework. We use extracted nodes from the last hidden layer of CNN with Monte Carlo (MC) dropout as informative covariates in GLM. This improves accuracy in prediction and regression coefficient inference, allowing for the interpretation of coefficients and uncertainty quantification. By fitting ensemble GLMs across multiple realizations from MC dropout, we can account for uncertainties in extracting the features. We apply our methods to biological and epidemiological problems, which have both high-dimensional correlated inputs and vector covariates. Specifically, we consider malaria incidence data, brain tumor image data, and fMRI data. By extracting information from correlated inputs, the proposed method can provide an interpretable Bayesian analysis. The algorithm can be broadly applicable to image regressions or correlated data analysis by enabling accurate Bayesian inference quickly.