Mario DiPaola
Research Subjects
Mario DiPaola has a total of 9 co-authors. Here are the top co-authors by number of shared publications:
- Mahesh Koirala
Therabene Inc., Norwood, MA 02062, USA
4 shared publications A. Smith
Peterson Smith Equine Hospital
1 shared publicationC. Loughran
Peterson Smith Equine Hospital
1 shared publicationE. McNeil
Ovid Technologies Inc Norwood
1 shared publicationFairfield Bain
Rood and Riddle Equine Hospital
1 shared publicationJon Drobnis
Ovid Technologies Inc Norwood
1 shared publication
Latest Publications
- Open Access
- 5 March 2026
- Published by Wiley
Synovial Cytokine Modulation Following Perinatal Tissue Therapy in Equine Joints ± NSAID Administration
Osteoarthritis (OA) is a leading cause of lameness in horses. A number of treatment modalities are currently available for OA, including NSAIDs, disease modifying systemic drugs such as pentosan polysulfate (PPS), corticosteroids, platelet rich plasma (PRP), autologous conditioned serum (IRAP/ACS), stem cell therapy (MSC), extracellular vesicles (EVs) and amnion products. While NSAIDs and steroids alleviate pain and inflammation temporarily, they have minimal impact on stopping or reversing joint damage. Therapeutics modalities such as PRP, IRAP, MSC, EVs and amnion products are more likely to not only block inflammation but also potentially reverse joint damage. Over the past decade, the use of regenerative therapeutics in veterinary medicine has garnered significant interest. While stem cells represent a familiar approach to induce tissue regeneration and healing 1 , other therapeutic products such as tissue-derived biologics, as well as purified biologics from natural tissues have shown great promise in the treatment of various diseases and musculoskeletal system injuries 2 .
- 5 March 2026
- Published by Wiley
Open AccessSynovial Cytokine Modulation Following Perinatal Tissue Therapy in Equine Joints ± NSAID Administration
Osteoarthritis (OA) is a leading cause of lameness in horses. A number of treatment modalities are currently available for OA, including NSAIDs, disease modifying systemic drugs such as pentosan polysulfate (PPS), corticosteroids, platelet rich plasma (PRP), autologous conditioned serum (IRAP/ACS), stem cell therapy (MSC), extracellular vesicles (EVs) and amnion products. While NSAIDs and steroids alleviate pain and inflammation temporarily, they have minimal impact on stopping or reversing joint damage. Therapeutics modalities such as PRP, IRAP, MSC, EVs and amnion products are more likely to not only block inflammation but also potentially reverse joint damage. Over the past decade, the use of regenerative therapeutics in veterinary medicine has garnered significant interest. While stem cells represent a familiar approach to induce tissue regeneration and healing 1 , other therapeutic products such as tissue-derived biologics, as well as purified biologics from natural tissues have shown great promise in the treatment of various diseases and musculoskeletal system injuries 2 .
- Top Cited PapersOpen Access
- 25 September 2025
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 26 (19) , 9384
AI-Integrated QSAR Modeling for Enhanced Drug Discovery: From Classical Approaches to Deep Learning and Structural Insight
Integrating artificial intelligence (AI) with the Quantitative Structure-Activity Relationship (QSAR) has transformed modern drug discovery by empowering faster, more accurate, and scalable identification of therapeutic compounds. This review outlines the evolution from classical QSAR methods, such as multiple linear regression and partial least squares, to advanced machine learning and deep learning approaches, including graph neural networks and SMILES-based transformers. Molecular docking and molecular dynamics simulations are presented as cooperative tools that boost the mechanistic consideration and structural insight into the ligand-target interactions. Discussions on using PROTACs and targeted protein degradation, ADMET prediction, and public databases and cloud-based platforms to democratize access to computational modeling are well presented with priority. Challenges related to authentication, interpretability, regulatory standards, and ethical concerns are examined, along with emerging patterns in AI-driven drug development. This review is a guideline for using computational models and databases in explainable, data-rich and profound drug discovery pipelines.
- 25 September 2025
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 26 (19) , 9384
Top Cited PapersOpen AccessAI-Integrated QSAR Modeling for Enhanced Drug Discovery: From Classical Approaches to Deep Learning and Structural Insight
Integrating artificial intelligence (AI) with the Quantitative Structure-Activity Relationship (QSAR) has transformed modern drug discovery by empowering faster, more accurate, and scalable identification of therapeutic compounds. This review outlines the evolution from classical QSAR methods, such as multiple linear regression and partial least squares, to advanced machine learning and deep learning approaches, including graph neural networks and SMILES-based transformers. Molecular docking and molecular dynamics simulations are presented as cooperative tools that boost the mechanistic consideration and structural insight into the ligand-target interactions. Discussions on using PROTACs and targeted protein degradation, ADMET prediction, and public databases and cloud-based platforms to democratize access to computational modeling are well presented with priority. Challenges related to authentication, interpretability, regulatory standards, and ethical concerns are examined, along with emerging patterns in AI-driven drug development. This review is a guideline for using computational models and databases in explainable, data-rich and profound drug discovery pipelines.
- Open Access
- 8 August 2024
- Published by MDPI AG in Biomedicines
- Vol. 12 (8) , 1801
Overcoming Cancer Resistance: Strategies and Modalities for Effective Treatment
Resistance to cancer drugs is a complex phenomenon that poses a significant challenge in the treatment of various malignancies. This review comprehensively explores cancer resistance mechanisms and discusses emerging strategies and modalities to overcome this obstacle. Many factors contribute to cancer resistance, including genetic mutations, activation of alternative signaling pathways, and alterations in the tumor microenvironment. Innovative approaches, such as targeted protein degradation, immunotherapy combinations, precision medicine, and novel drug delivery systems, hold promise for improving treatment outcomes. Understanding the intricacies of cancer resistance and leveraging innovative modalities are essential for advancing cancer therapy.
- 8 August 2024
- Published by MDPI AG in Biomedicines
- Vol. 12 (8) , 1801
Open AccessOvercoming Cancer Resistance: Strategies and Modalities for Effective Treatment
Resistance to cancer drugs is a complex phenomenon that poses a significant challenge in the treatment of various malignancies. This review comprehensively explores cancer resistance mechanisms and discusses emerging strategies and modalities to overcome this obstacle. Many factors contribute to cancer resistance, including genetic mutations, activation of alternative signaling pathways, and alterations in the tumor microenvironment. Innovative approaches, such as targeted protein degradation, immunotherapy combinations, precision medicine, and novel drug delivery systems, hold promise for improving treatment outcomes. Understanding the intricacies of cancer resistance and leveraging innovative modalities are essential for advancing cancer therapy.
- Open Access
- 22 February 2024
- Published by MDPI AG in Current Issues in Molecular Biology
- Vol. 46 (3) , 1713-1730
Targeting CDK9 in Cancer: An Integrated Approach of Combining In Silico Screening with Experimental Validation for Novel Degraders
The persistent threat of cancer remains a significant hurdle for global health, prompting the exploration of innovative approaches in the quest for successful therapeutic interventions. Cyclin-dependent kinase 9 (CDK9), a central player in transcription regulation and cell cycle progression, has emerged as a promising target to combat cancer. Its pivotal role in oncogenic pathways and the pressing need for novel cancer treatments has propelled CDK9 into the spotlight of drug discovery efforts. This article presents a comprehensive study that connects a multidisciplinary approach, combining computational methodologies, experimental validation, and the transformative Proteolysis-Targeting Chimera (PROTAC) technology. By uniting these diverse techniques, we aim to identify, characterize, and optimize a new class of degraders targeting CDK9. We explore these compounds for targeted protein degradation, offering a novel and potentially effective approach to cancer therapy. This cohesive strategy utilizes the combination of computational predictions and experimental insights, with the goal of advancing the development of effective anticancer therapeutics, targeting CDK9.
- 22 February 2024
- Published by MDPI AG in Current Issues in Molecular Biology
- Vol. 46 (3) , 1713-1730
Open AccessTargeting CDK9 in Cancer: An Integrated Approach of Combining In Silico Screening with Experimental Validation for Novel Degraders
The persistent threat of cancer remains a significant hurdle for global health, prompting the exploration of innovative approaches in the quest for successful therapeutic interventions. Cyclin-dependent kinase 9 (CDK9), a central player in transcription regulation and cell cycle progression, has emerged as a promising target to combat cancer. Its pivotal role in oncogenic pathways and the pressing need for novel cancer treatments has propelled CDK9 into the spotlight of drug discovery efforts. This article presents a comprehensive study that connects a multidisciplinary approach, combining computational methodologies, experimental validation, and the transformative Proteolysis-Targeting Chimera (PROTAC) technology. By uniting these diverse techniques, we aim to identify, characterize, and optimize a new class of degraders targeting CDK9. We explore these compounds for targeted protein degradation, offering a novel and potentially effective approach to cancer therapy. This cohesive strategy utilizes the combination of computational predictions and experimental insights, with the goal of advancing the development of effective anticancer therapeutics, targeting CDK9.
- Open Access
- 11 January 2024
- Published by MDPI AG in Preprints.org
Targeting CDK9 in Cancer: An Integrated Approach of Combining In-Silico Screening with Experimental Validation for Novel Degraders
The persistent threat of cancer remains a significant hurdle for global health, prompting the exploration of innovative approaches in the quest for successful therapeutic interventions. Cyclin-dependent kinase 9 (CDK9), a central player in transcription regulation and cell cycle progression, has emerged as a promising target to combat cancer. Its pivotal role in oncogenic pathways and the pressing need for novel cancer treatments has propelled CDK9 into the spotlight of drug discovery efforts. This article presents a comprehensive study that connects a multidisciplinary approach, combining computational methodologies, experimental validation, and the transformative PROTAC (Proteolysis-Targeting Chimera) technology. By uniting these diverse techniques, we aim to identify, characterize, and optimize a new class of degraders targeting CDK9. We explore these compounds for kinase inhibitory properties and potential to induce targeted protein degradation, offering a novel and potentially more sustainable approach to cancer therapy. This cohesive strategy expresses the interface between computational predictions and experimental insights, with the ultimate goal of advancing the development of effective anticancer therapeutics targeting CDK9.
- 11 January 2024
- Published by MDPI AG in Preprints.org
Open AccessTargeting CDK9 in Cancer: An Integrated Approach of Combining In-Silico Screening with Experimental Validation for Novel Degraders
The persistent threat of cancer remains a significant hurdle for global health, prompting the exploration of innovative approaches in the quest for successful therapeutic interventions. Cyclin-dependent kinase 9 (CDK9), a central player in transcription regulation and cell cycle progression, has emerged as a promising target to combat cancer. Its pivotal role in oncogenic pathways and the pressing need for novel cancer treatments has propelled CDK9 into the spotlight of drug discovery efforts. This article presents a comprehensive study that connects a multidisciplinary approach, combining computational methodologies, experimental validation, and the transformative PROTAC (Proteolysis-Targeting Chimera) technology. By uniting these diverse techniques, we aim to identify, characterize, and optimize a new class of degraders targeting CDK9. We explore these compounds for kinase inhibitory properties and potential to induce targeted protein degradation, offering a novel and potentially more sustainable approach to cancer therapy. This cohesive strategy expresses the interface between computational predictions and experimental insights, with the ultimate goal of advancing the development of effective anticancer therapeutics targeting CDK9.