Wanqin Zhang

Flaviviruses encode a conserved, membrane-associated nonstructural protein 1 (NS1) with replication and immune evasion functions. The current knowledge of secreted NS1 (sNS1) oligomers is based on several low-resolution structures, thus hindering the development of drugs and vaccines against flaviviruses. Here, we revealed that recombinant sNS1 from flaviviruses exists in a dynamic equilibrium of dimer-tetramer-hexamer states. Two DENV4 hexameric NS1 structures and several tetrameric NS1 structures from multiple flaviviruses were solved at atomic resolution by cryo-EM. The stacking of the tetrameric NS1 and hexameric NS1 is facilitated by the hydrophobic β-roll and connector domains. Additionally, a triacylglycerol molecule located within the central cavity may play a role in stabilizing the hexamer. Based on differentiated interactions between the dimeric NS1, two distinct hexamer models (head-to-head and side-to-side hexamer) and the step-by-step assembly mechanisms of NS1 dimer into hexamer were proposed. We believe that our study sheds light on the understanding of the NS1 oligomerization and contributes to NS1-based therapies.

Media depth (MD) and moisture content (MC) are two important factors that greatly influence biofilter performance. The purpose of this study was to investigate the combined effect of MC and MD on removing ammonia (NH₃), hydrogen sulfide (H₂S), and nitrous oxide (N₂O) from swine barns. Biofiltration performance of different MDs and MCs in combination based on a mixed medium of wood chips and compost was monitored. A 3 × 3 factorial design was adopted, which included three levels of the two factors (MC: 45%, 55%, and 67% [wet basis]; MD: 0.17, 0.33, and 0.50 m). Results indicated that high MC and MD could improve NH₃ removal efficiency, but increase outlet N₂O concentration. When MC was 67%, the average NH₃ removal efficiency of three MDs (0.17, 0.33, and, 0.50 m) ranged from 77.4% to 78.7%; the range of average H₂S removal efficiency dropped from 68.1–90.0% (1–34 days of the test period) to 36.8–63.7% (35–58 days of the test period); and the average outlet N₂O concentration increased by 25.5–60.1%. When MC was 55%, the average removal efficiency of NH₃, H₂S, and N₂O for treatment with 0.33 m MD was 72.8 ± 5.9%, 70.9 ± 13.3%, and –18.9 ± 8.1%, respectively; and the average removal efficiency of NH₃, H₂S, and N₂O for treatment with 0.50 m MD was 77.7 ± 4.2%, 65.8 ± 13.7%, and –24.5 ±12.1%, respectively. When MC was 45%, the highest average NH₃ reduction efficiency among three MDs was 60.7% for 0.5 m MD, and the average N₂O removal efficiency for three MDs ranged from –18.8% to –12.7%. In addition, the pressure drop of 0.33 m MD was significantly lower than that of 0.50 m MD (p < 0.05). To obtain high mitigation of NH₃ and H₂S and avoid elevated emission of N₂O and large pressure drop, 0.33 m MD at 55% MC is recommended. Implications: The performances of biofilters with three different media depths (0.17, 0.33, and 0.50 m) and three different media moisture contents (45%, 55%, and 67% [wet basis]) were compared to remove gases from a swine barn. Using wood chips and compost mixture as the biofilters media, the combination of 0.33 m media depth and 55% media moisture content is recommended to obtain good reduction of NH₃ and H₂S, and to simultaneously prevent elevated emission of N₂O and large pressure drop across the media.