Julia Wolleb
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Julia Wolleb has a total of 66 co-authors. Here are the top co-authors by number of shared publications:
- Philippe Claude Cattin
University of Basel
14 shared publications Florentin Bieder
University of Basel
9 shared publications- Alicia Durrer
University of Basel
8 shared publications - Florentin Bieder
University of Basel
7 shared publications Philippe C. Cattin
University of Basel
7 shared publications- Paul Friedrich
University of Basel
6 shared publications
Latest Publications
- 2 February 2027
- Published by Springer Nature
- p. 475-485
cWDM: Conditional Wavelet Diffusion Models for Cross-Modality 3D Medical Image Synthesis
- 2 February 2027
- Published by Springer Nature
- p. 475-485
cWDM: Conditional Wavelet Diffusion Models for Cross-Modality 3D Medical Image Synthesis
- 2 February 2027
- Published by Springer Nature
- p. 559-568
Pseudo-3D Denoising Diffusion Model for 3D Healthy Tissue Inpainting
- 2 February 2027
- Published by Springer Nature
- p. 559-568
Pseudo-3D Denoising Diffusion Model for 3D Healthy Tissue Inpainting
- 26 September 2026
- Published by Springer Nature
- p. 369-379
Low-Rank-Modulated Functa: Exploring the Latent Space of Implicit Neural Representations for Interpretable Ultrasound Video Analysis
- 26 September 2026
- Published by Springer Nature
- p. 369-379
Low-Rank-Modulated Functa: Exploring the Latent Space of Implicit Neural Representations for Interpretable Ultrasound Video Analysis
- Open Access
- 3 June 2026
- Published by Springer Nature in npj Digital Surgery
- Vol. 1 (1) , 8
How artificial intelligence and human expertise will improve access to healthcare in the Global South
- 3 June 2026
- Published by Springer Nature in npj Digital Surgery
- Vol. 1 (1) , 8
Open AccessHow artificial intelligence and human expertise will improve access to healthcare in the Global South
- 2 January 2026
- Published by Springer Nature
- p. 432-441
Scheduled Cross-Domain Multi-center DINO for Robust High-Content Screening Representation Learning
- 2 January 2026
- Published by Springer Nature
- p. 432-441
Scheduled Cross-Domain Multi-center DINO for Robust High-Content Screening Representation Learning
- Open Access
- 1 November 2025
- Published by Machine Learning for Biomedical Imaging in Machine Learning for Biomedical Imaging
- Vol. 3 (November 2) , 687-711
Denoising Diffusion Models for Anomaly Localization in Medical Images
This review explores anomaly localization in medical images using denoising diffusion models. After providing a brief methodological background of these models, including their application to image reconstruction and their conditioning using guidance mechanisms, we provide an overview of available datasets and evaluation metrics suitable for their application to anomaly localization in medical images. In this context, we discuss supervision schemes ranging from fully supervised segmentation to semi-supervised, weakly supervised, self-supervised, and unsupervised methods, and provide insights into the effectiveness and limitations of these approaches. Furthermore, we highlight open challenges in anomaly localization, including detection bias, domain shift, computational cost, and model interpretability. Our goal is to provide an overview of the current state of the art in the field, outline research gaps, and highlight the potential of diffusion models for robust anomaly localization in medical images.
- 1 November 2025
- Published by Machine Learning for Biomedical Imaging in Machine Learning for Biomedical Imaging
- Vol. 3 (November 2) , 687-711
Open AccessDenoising Diffusion Models for Anomaly Localization in Medical Images
This review explores anomaly localization in medical images using denoising diffusion models. After providing a brief methodological background of these models, including their application to image reconstruction and their conditioning using guidance mechanisms, we provide an overview of available datasets and evaluation metrics suitable for their application to anomaly localization in medical images. In this context, we discuss supervision schemes ranging from fully supervised segmentation to semi-supervised, weakly supervised, self-supervised, and unsupervised methods, and provide insights into the effectiveness and limitations of these approaches. Furthermore, we highlight open challenges in anomaly localization, including detection bias, domain shift, computational cost, and model interpretability. Our goal is to provide an overview of the current state of the art in the field, outline research gaps, and highlight the potential of diffusion models for robust anomaly localization in medical images.
- 27 September 2025
- Published by Springer Nature
- p. 109-119
VidFuncta: Towards Generalizable Neural Representations for Ultrasound Videos
- 27 September 2025
- Published by Springer Nature
- p. 109-119
VidFuncta: Towards Generalizable Neural Representations for Ultrasound Videos
- Open Access
VidFuncta: Towards Generalizable Neural Representations for Ultrasound Videos
Ultrasound is widely used in clinical care, yet standard deep learning methods often struggle with full video analysis due to non-standardized acquisition and operator bias. We offer a new perspective on ultrasound video analysis through implicit neural representations (INRs). We build on Functa, an INR framework in which each image is represented by a modulation vector that conditions a shared neural network. However, its extension to the temporal domain of medical videos remains unexplored. To address this gap, we propose VidFuncta, a novel framework that leverages Functa to encode variable-length ultrasound videos into compact, time-resolved representations. VidFuncta disentangles each video into a static video-specific vector and a sequence of time-dependent modulation vectors, capturing both temporal dynamics and dataset-level redundancies. Our method outperforms 2D and 3D baselines on video reconstruction and enables downstream tasks to directly operate on the learned 1D modulation vectors. We validate VidFuncta on three public ultrasound video datasets -- cardiac, lung, and breast -- and evaluate its downstream performance on ejection fraction prediction, B-line detection, and breast lesion classification. These results highlight the potential of VidFuncta as a generalizable and efficient representation framework for ultrasound videos. Our code is publicly available under https://github.com/JuliaWolleb/VidFuncta_public.
Open AccessVidFuncta: Towards Generalizable Neural Representations for Ultrasound Videos
Ultrasound is widely used in clinical care, yet standard deep learning methods often struggle with full video analysis due to non-standardized acquisition and operator bias. We offer a new perspective on ultrasound video analysis through implicit neural representations (INRs). We build on Functa, an INR framework in which each image is represented by a modulation vector that conditions a shared neural network. However, its extension to the temporal domain of medical videos remains unexplored. To address this gap, we propose VidFuncta, a novel framework that leverages Functa to encode variable-length ultrasound videos into compact, time-resolved representations. VidFuncta disentangles each video into a static video-specific vector and a sequence of time-dependent modulation vectors, capturing both temporal dynamics and dataset-level redundancies. Our method outperforms 2D and 3D baselines on video reconstruction and enables downstream tasks to directly operate on the learned 1D modulation vectors. We validate VidFuncta on three public ultrasound video datasets -- cardiac, lung, and breast -- and evaluate its downstream performance on ejection fraction prediction, B-line detection, and breast lesion classification. These results highlight the potential of VidFuncta as a generalizable and efficient representation framework for ultrasound videos. Our code is publicly available under https://github.com/JuliaWolleb/VidFuncta_public.
- 28 December 2024
- Published by Springer Nature
- p. 35-45
Denoising Diffusion Models for Inpainting of Healthy Brain Tissue
- 28 December 2024
- Published by Springer Nature
- p. 35-45
Denoising Diffusion Models for Inpainting of Healthy Brain Tissue
- Open Access
cWDM: Conditional Wavelet Diffusion Models for Cross-Modality 3D Medical Image Synthesis
This paper contributes to the "BraTS 2024 Brain MR Image Synthesis Challenge" and presents a conditional Wavelet Diffusion Model (cWDM) for directly solving a paired image-to-image translation task on high-resolution volumes. While deep learning-based brain tumor segmentation models have demonstrated clear clinical utility, they typically require MR scans from various modalities (T1, T1ce, T2, FLAIR) as input. However, due to time constraints or imaging artifacts, some of these modalities may be missing, hindering the application of well-performing segmentation algorithms in clinical routine. To address this issue, we propose a method that synthesizes one missing modality image conditioned on three available images, enabling the application of downstream segmentation models. We treat this paired image-to-image translation task as a conditional generation problem and solve it by combining a Wavelet Diffusion Model for high-resolution 3D image synthesis with a simple conditioning strategy. This approach allows us to directly apply our model to full-resolution volumes, avoiding artifacts caused by slice- or patch-wise data processing. While this work focuses on a specific application, the presented method can be applied to all kinds of paired image-to-image translation problems, such as CT $\leftrightarrow$ MR and MR $\leftrightarrow$ PET translation, or mask-conditioned anatomically guided image generation.Open AccesscWDM: Conditional Wavelet Diffusion Models for Cross-Modality 3D Medical Image Synthesis
This paper contributes to the "BraTS 2024 Brain MR Image Synthesis Challenge" and presents a conditional Wavelet Diffusion Model (cWDM) for directly solving a paired image-to-image translation task on high-resolution volumes. While deep learning-based brain tumor segmentation models have demonstrated clear clinical utility, they typically require MR scans from various modalities (T1, T1ce, T2, FLAIR) as input. However, due to time constraints or imaging artifacts, some of these modalities may be missing, hindering the application of well-performing segmentation algorithms in clinical routine. To address this issue, we propose a method that synthesizes one missing modality image conditioned on three available images, enabling the application of downstream segmentation models. We treat this paired image-to-image translation task as a conditional generation problem and solve it by combining a Wavelet Diffusion Model for high-resolution 3D image synthesis with a simple conditioning strategy. This approach allows us to directly apply our model to full-resolution volumes, avoiding artifacts caused by slice- or patch-wise data processing. While this work focuses on a specific application, the presented method can be applied to all kinds of paired image-to-image translation problems, such as CT $\leftrightarrow$ MR and MR $\leftrightarrow$ PET translation, or mask-conditioned anatomically guided image generation.