Özge Demir
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Özge Demir has a total of 16 co-authors. Here are the top co-authors by number of shared publications:
- Frank Surup
Department of Microbial Drugs, Helmholtz Centre for Infection Research (HZI), Inhoffenstrasse 7, 38124 Braunschweig, Germany
5 shared publications - Barbara Schulz
Technische Universität Braunschweig, Institute of Microbiology, Spielmannstrasse 7, 38106, Braunschweig, Germany
3 shared publications - Michael Steinert
Institute of Applied Physics, Abbe Center of Photonics, Friedrich Schiller University Jena
3 shared publications - Maia Ridley
Julius Kühn-Institut
2 shared publications - Marc Stadler
Institute of Microbiology, Technische Universität Braunschweig, Brunswick, Germany
2 shared publications - Rasmus Enderle
Institute for Forest Protection, Julius Kühn Institute, Braunschweig, Germany
2 shared publications
Latest Publications
- Open Access
- 29 August 2025
- Published by Elsevier in Fungal Biology
- Vol. 129 (7) , 101646
Fungal endophytes with anti-fungal metabolites reduce symptoms of ash dieback in Fraxinus excelsior in a greenhouse experiment
- 29 August 2025
- Published by Elsevier in Fungal Biology
- Vol. 129 (7) , 101646
Open AccessFungal endophytes with anti-fungal metabolites reduce symptoms of ash dieback in Fraxinus excelsior in a greenhouse experiment
- Open Access
Cytochalasins from the Ash Endophytic Fungus Nemania diffusa DSM 116299
The secondary metabolome of Nemania diffusa, isolated as an ash endophytic fungus, was analyzed in detail. From its cultures, a previously undescribed cytochalasin 1 was isolated using preparative HPLC, together with six known congeners: 18-dehydroxy-cytochalasin E (2), cytochalasins Z7 (3), Z8 (4), and E (5), 18-dehydroxy-17-didehydro-cytochalasin E (6), and K Steyn (7). The structures of these compounds were determined using data from high-resolution mass spectrometry (HR-MS), in combination with 1D and 2D nuclear magnetic resonance (NMR) spectroscopy. Metabolites 1–4 share a characteristic 12-membered lactone moiety, placing them within a rarely examined cytochalasin subclass. Thus, the compounds were incorporated into our ongoing screening campaign to study the structure–activity relationship of this metabolite family. We initially determined their cytotoxicity in eukaryotic mouse fibroblast L929 cells using an MTT-based colorimetric assay, and further investigated their effect on the cellular actin dynamics of the human osteosarcoma cell line U-2OS in detail. Unexpectedly, we discovered a high number of irreversible compounds (1, 2, and 4). Additionally, we highlighted specific structural features within the 12-membered cytochalasin subclass that may play a role in directing the reversibility of these compounds.
Open AccessCytochalasins from the Ash Endophytic Fungus Nemania diffusa DSM 116299
The secondary metabolome of Nemania diffusa, isolated as an ash endophytic fungus, was analyzed in detail. From its cultures, a previously undescribed cytochalasin 1 was isolated using preparative HPLC, together with six known congeners: 18-dehydroxy-cytochalasin E (2), cytochalasins Z7 (3), Z8 (4), and E (5), 18-dehydroxy-17-didehydro-cytochalasin E (6), and K Steyn (7). The structures of these compounds were determined using data from high-resolution mass spectrometry (HR-MS), in combination with 1D and 2D nuclear magnetic resonance (NMR) spectroscopy. Metabolites 1–4 share a characteristic 12-membered lactone moiety, placing them within a rarely examined cytochalasin subclass. Thus, the compounds were incorporated into our ongoing screening campaign to study the structure–activity relationship of this metabolite family. We initially determined their cytotoxicity in eukaryotic mouse fibroblast L929 cells using an MTT-based colorimetric assay, and further investigated their effect on the cellular actin dynamics of the human osteosarcoma cell line U-2OS in detail. Unexpectedly, we discovered a high number of irreversible compounds (1, 2, and 4). Additionally, we highlighted specific structural features within the 12-membered cytochalasin subclass that may play a role in directing the reversibility of these compounds.
- Open Access
- 31 January 2025
- Published by Springer Nature in Journal of Plant Diseases and Protection
- Vol. 132 (2) , 1-19
Priming of ash saplings with a low virulent Hymenoscyphus fraxineus strain as a possible disease control approach for reducing symptoms of ash dieback
Ash dieback is a tree disease caused by the fungal pathogen Hymenoscyphus fraxineus. Since its introduction into Europe, it has caused widespread and significant losses of the European ash, Fraxinus excelsior. Inoculations of F. excelsior with a low virulent H. fraxineus isolate were assessed as a promising method for reducing symptoms associated with ash dieback, presumably by triggering systemic induced resistance. Two strains of H. fraxineus were chosen based on observations of high and low in planta virulence. Crude extracts obtained from cultures of the highly virulent strain were more phytotoxic in a leaf puncture assay than ones obtained from the low virulent strain. UHPLC-DAD-MS/MS data identified the phytotoxin viridiol and the potential phytotoxin hyfraxin A in both cultures. However, the production of these compounds in vitro did not correspond with virulence in planta. To test the effects of priming, saplings of F. excelsior were first inoculated with the low virulent strain and subsequently with the highly virulent strain. On average, necrosis expansion on the stems was reduced by 53% in primed saplings at the end of the 14-week monitoring period, thus providing proof of the priming concept. These results contribute to our understanding of a possible integrated biological disease control approach for increasing resistance in saplings and reducing potential damages associated with pathogens, particularly during nursery propagation, out-planting and through the establishment phase. We discuss results in the context of relevant literature and summarise the limited availability of literature on priming and underlying principles in trees.
- 31 January 2025
- Published by Springer Nature in Journal of Plant Diseases and Protection
- Vol. 132 (2) , 1-19
Open AccessPriming of ash saplings with a low virulent Hymenoscyphus fraxineus strain as a possible disease control approach for reducing symptoms of ash dieback
Ash dieback is a tree disease caused by the fungal pathogen Hymenoscyphus fraxineus. Since its introduction into Europe, it has caused widespread and significant losses of the European ash, Fraxinus excelsior. Inoculations of F. excelsior with a low virulent H. fraxineus isolate were assessed as a promising method for reducing symptoms associated with ash dieback, presumably by triggering systemic induced resistance. Two strains of H. fraxineus were chosen based on observations of high and low in planta virulence. Crude extracts obtained from cultures of the highly virulent strain were more phytotoxic in a leaf puncture assay than ones obtained from the low virulent strain. UHPLC-DAD-MS/MS data identified the phytotoxin viridiol and the potential phytotoxin hyfraxin A in both cultures. However, the production of these compounds in vitro did not correspond with virulence in planta. To test the effects of priming, saplings of F. excelsior were first inoculated with the low virulent strain and subsequently with the highly virulent strain. On average, necrosis expansion on the stems was reduced by 53% in primed saplings at the end of the 14-week monitoring period, thus providing proof of the priming concept. These results contribute to our understanding of a possible integrated biological disease control approach for increasing resistance in saplings and reducing potential damages associated with pathogens, particularly during nursery propagation, out-planting and through the establishment phase. We discuss results in the context of relevant literature and summarise the limited availability of literature on priming and underlying principles in trees.
- Open Access
- 16 July 2024
- Published by Springer Nature in Mycological Progress
- Vol. 23 (1) , 1-11
Elucidation of the life cycle of a saprotrophic inoperculate discomycete that is associated with pinesap using a polyphasic taxonomic approach
This study deals with the elucidation of the life cycle of an inoperculate discomycete that was eventually collected from conifer wood in South Germany and has become famous for the extraordinary diversity of its secondary metabolites when it was studied extensively during the 1990s. It had then been identified as Lachnum papyraceum (Lachnaceae, Helotiales) based on morphological traits, and extracts from its mycelial cultures were found to possess extraordinary nematicidal and antibiotic activities. Over 60 different secondary metabolites were finally identified from this fungus after extensive variation of culture media and scale-up of production up to 100-L scale. Among the main active principles were mycorrhizin A and chloromycorrhizin A, which had first been reported in 1977 from an unnamed “mycorrhizal” fungus of the hemiparasitic plant, Monotropa hypopitys (pinesap), that was isolated in Sweden. We noted that both the Lachnum strain and the original mycorrhizin producer were still available in the public domain and decided to study them for comparison using a multilocus phylogeny and also generated secondary metabolite profiles of both strains using analytical high performance liquid chromatography coupled to diode array and mass spectrometric detection (HPLC–DAD/MS). Surprisingly, the sequence data as well as the secondary metabolite profiles of both strains were highly similar, and it was also confirmed by phylogenetic methods that the strains are indeed nested within the genus Lachnum by comparison of their ITS, LSU, and RPB2 sequences. The specimen called L. papyraceum in the old publications was tentatively re-identified by Hans-Otto Baral as L. cf. subvirgineum, but substantial further work on the taxonomy of the genus remains to be done, anyway. We conclude that some Lachnum species have a highly complex but all the more interesting life cycle, and the mycorrhizal symbiont partner may invade the host plant, where it may persist as an endophyte and finally turn saprotrophic on the wood of the senescent pine tree. The taxonomy of these fungi should also be further resolved in the future, using a polythetic concept that includes chemotaxonomic data and a multi-locus genealogy.
- 16 July 2024
- Published by Springer Nature in Mycological Progress
- Vol. 23 (1) , 1-11
Open AccessElucidation of the life cycle of a saprotrophic inoperculate discomycete that is associated with pinesap using a polyphasic taxonomic approach
This study deals with the elucidation of the life cycle of an inoperculate discomycete that was eventually collected from conifer wood in South Germany and has become famous for the extraordinary diversity of its secondary metabolites when it was studied extensively during the 1990s. It had then been identified as Lachnum papyraceum (Lachnaceae, Helotiales) based on morphological traits, and extracts from its mycelial cultures were found to possess extraordinary nematicidal and antibiotic activities. Over 60 different secondary metabolites were finally identified from this fungus after extensive variation of culture media and scale-up of production up to 100-L scale. Among the main active principles were mycorrhizin A and chloromycorrhizin A, which had first been reported in 1977 from an unnamed “mycorrhizal” fungus of the hemiparasitic plant, Monotropa hypopitys (pinesap), that was isolated in Sweden. We noted that both the Lachnum strain and the original mycorrhizin producer were still available in the public domain and decided to study them for comparison using a multilocus phylogeny and also generated secondary metabolite profiles of both strains using analytical high performance liquid chromatography coupled to diode array and mass spectrometric detection (HPLC–DAD/MS). Surprisingly, the sequence data as well as the secondary metabolite profiles of both strains were highly similar, and it was also confirmed by phylogenetic methods that the strains are indeed nested within the genus Lachnum by comparison of their ITS, LSU, and RPB2 sequences. The specimen called L. papyraceum in the old publications was tentatively re-identified by Hans-Otto Baral as L. cf. subvirgineum, but substantial further work on the taxonomy of the genus remains to be done, anyway. We conclude that some Lachnum species have a highly complex but all the more interesting life cycle, and the mycorrhizal symbiont partner may invade the host plant, where it may persist as an endophyte and finally turn saprotrophic on the wood of the senescent pine tree. The taxonomy of these fungi should also be further resolved in the future, using a polythetic concept that includes chemotaxonomic data and a multi-locus genealogy.
- Open Access
- 8 November 2023
- Published by MDPI AG in Biomolecules
- Vol. 13 (11) , 1632
Bioactive Compounds from an Endophytic Pezicula sp. Showing Antagonistic Effects against the Ash Dieback Pathogen
A fungal endophyte originating from the Canary Islands was identified as a potent antagonist against the fungal phytopathogen Hymenoscyphus fraxineus, which causes the devastating ash dieback disease. This endophyte was tentatively identified as Pezicula cf. ericae, using molecular barcoding. Isolation of secondary metabolites by preparative high-performance liquid chromatography (HPLC) yielded the known compounds CJ-17,572 (1), mycorrhizin A (3) and cryptosporioptides A–C (4–6), besides a new N-acetylated dihydroxyphenylalanin derivative 2, named peziculastatin. Planar structures were elucidated by NMR and HRMS data, while the relative stereochemistry of 2 was assigned by H,H and C,H coupling constants. The assignment of the unknown stereochemistry of CJ-17,572 (1) was hampered by the broadening of NMR signals. Nevertheless, after semisynthetic conversion of 1 into its methyl derivatives 7 and 8, presumably preventing tautomeric effects, the relative configuration could be assigned, whereas comparison of ECD data to those of related compounds determined the absolute configuration. Metabolites 1 and 3 showed significant antifungal effects in vitro against H. fraxineus. Furthermore, 4–6 exhibited significant dispersive effects on preformed biofilms of S. aureus at concentrations up to 2 µg/mL, while the biofilm formation of C. albicans was also inhibited. Thus, cryptosporioptides might constitute a potential source for the development of novel antibiofilm agents.
- 8 November 2023
- Published by MDPI AG in Biomolecules
- Vol. 13 (11) , 1632
Open AccessBioactive Compounds from an Endophytic Pezicula sp. Showing Antagonistic Effects against the Ash Dieback Pathogen
A fungal endophyte originating from the Canary Islands was identified as a potent antagonist against the fungal phytopathogen Hymenoscyphus fraxineus, which causes the devastating ash dieback disease. This endophyte was tentatively identified as Pezicula cf. ericae, using molecular barcoding. Isolation of secondary metabolites by preparative high-performance liquid chromatography (HPLC) yielded the known compounds CJ-17,572 (1), mycorrhizin A (3) and cryptosporioptides A–C (4–6), besides a new N-acetylated dihydroxyphenylalanin derivative 2, named peziculastatin. Planar structures were elucidated by NMR and HRMS data, while the relative stereochemistry of 2 was assigned by H,H and C,H coupling constants. The assignment of the unknown stereochemistry of CJ-17,572 (1) was hampered by the broadening of NMR signals. Nevertheless, after semisynthetic conversion of 1 into its methyl derivatives 7 and 8, presumably preventing tautomeric effects, the relative configuration could be assigned, whereas comparison of ECD data to those of related compounds determined the absolute configuration. Metabolites 1 and 3 showed significant antifungal effects in vitro against H. fraxineus. Furthermore, 4–6 exhibited significant dispersive effects on preformed biofilms of S. aureus at concentrations up to 2 µg/mL, while the biofilm formation of C. albicans was also inhibited. Thus, cryptosporioptides might constitute a potential source for the development of novel antibiofilm agents.