Josiane Sobrinho
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Josiane Sobrinho has a total of 6 co-authors. Here are the top co-authors by number of shared publications:
- Ana de Bettencourt-Dias
University of Nevada, Reno
1 shared publication - David C. Cantu
University of Nevada, Reno
1 shared publication - Difan Zhang
Pacific Northwest National Laboratory
1 shared publication - Roger Rousseau
Oak Ridge National Laboratory
1 shared publication - Thomas Jeffrey Summers
Los Alamos National Laboratory
1 shared publication - Vassiliki-Alexandra Glezakou
Oak Ridge National Laboratory
1 shared publication
Latest Publications
- Open Access
- 13 November 2024
- Published by American Chemical Society (ACS) in ChemRxiv
Pairing a Global Optimization Algorithm with EXAFS to Accelerate Prediction of Lanthanide Structures in Solution
Ensemble-average sampling of structures sampled from ab initio molecular dynamics (AIMD) simulations can be used to predict theoretical extended X-ray absorption fine structure (EXAFS) signals that closely match experimental spectra. However, AIMD simulations are time-consuming and resource-intensive, particularly for solvated lanthanide ions, which often form multiple non-rigid geometries with high coordination numbers. To accelerate the characterization of lanthanide structures in solution, we employed the Northwest Potential Energy Surface Search Engine (NWPEsSe), an adaptive-learning global optimization algorithm, to efficiently screen first-shell structures. As case studies, we examine two systems: Eu(NO3)3 dissolved in acetonitrile with a terpyridine ligand (terpyNO2), and Nd(NO3)3 dissolved in acetonitrile. The theoretical spectra for structures identified by NWPEsSe were compared to both experimental and AIMD-derived EXAFS spectra. The NWPEsSe algorithm successfully identified the proper solvation structure for both Eu(NO3)3(terpyNO2) and Nd(NO3)(acetonitrile)3, with the calculated EXAFS signals closely matching the experimental spectra for the Eu-ligand complex and showing good similarity for the Nd salt; the better agreement with the ligand-containing structure is attributed to a less dynamic coordination environment due to the rigid ligand. The key advantage of the global optimization algorithm lies in its ability to sample the coordination environment across the potential energy surface. The structure identification process can be done with a variety of methods and generally has reduced the time required from a month to within a week.
- 13 November 2024
- Published by American Chemical Society (ACS) in ChemRxiv
Open AccessPairing a Global Optimization Algorithm with EXAFS to Accelerate Prediction of Lanthanide Structures in Solution
Ensemble-average sampling of structures sampled from ab initio molecular dynamics (AIMD) simulations can be used to predict theoretical extended X-ray absorption fine structure (EXAFS) signals that closely match experimental spectra. However, AIMD simulations are time-consuming and resource-intensive, particularly for solvated lanthanide ions, which often form multiple non-rigid geometries with high coordination numbers. To accelerate the characterization of lanthanide structures in solution, we employed the Northwest Potential Energy Surface Search Engine (NWPEsSe), an adaptive-learning global optimization algorithm, to efficiently screen first-shell structures. As case studies, we examine two systems: Eu(NO3)3 dissolved in acetonitrile with a terpyridine ligand (terpyNO2), and Nd(NO3)3 dissolved in acetonitrile. The theoretical spectra for structures identified by NWPEsSe were compared to both experimental and AIMD-derived EXAFS spectra. The NWPEsSe algorithm successfully identified the proper solvation structure for both Eu(NO3)3(terpyNO2) and Nd(NO3)(acetonitrile)3, with the calculated EXAFS signals closely matching the experimental spectra for the Eu-ligand complex and showing good similarity for the Nd salt; the better agreement with the ligand-containing structure is attributed to a less dynamic coordination environment due to the rigid ligand. The key advantage of the global optimization algorithm lies in its ability to sample the coordination environment across the potential energy surface. The structure identification process can be done with a variety of methods and generally has reduced the time required from a month to within a week.