Carolina Cárcamo

Fish eye lenses offer a chronological archive of individual life histories and preserve genomic DNA. However, integrating ecological and genetic data is hindered by post‐mortem nuclease degradation, and standardized DNA preservation protocols for this tissue remain undefined. We evaluated chemical and thermal preservation methods to maximize DNA yield and integrity from fish lenses. Using a paired experimental design across three marine species, we demonstrate that chemical stabilization with TRIzol yields significantly higher DNA quantities (2654.7 ± 331.5 ng) than ultra‐low temperature freezing at −80°C (1425.4 ± 866.6 ng) or standard freezing at −20°C. TRIzol denatures endogenous nucleases upon contact, preventing the enzymatic fragmentation associated with passive freezing. This optimized protocol establishes a methodological standard for eco‐isotopic genomics, enabling the direct coupling of phenotypic chronologies with genotypes to assess marine population resilience.

Gut microbial community assembly involves a critical bioenergetic trade-off, yet the gut microbes with roles in influencing intestinal metabolic homeostasis remain poorly understood in pelagic ecosystems. A central unresolved question is whether microbiome structure is primarily governed by stochastic geographic drift or by deterministic metabolic filters imposed by diet. Here, we test the metabolic release hypothesis, which posits that access to high-quality prey physiologically “releases” the host from obligate dependence on diverse fermentative symbionts. By integrating δ15N analysis with 16S rRNA metabarcoding in the anchoveta from the South Pacific waters (Engraulis ringens), we reveal a profound, diet-induced restructuring of the gut ecosystem. We demonstrate that trophic ascent triggers a deterministic collapse in microbial alpha diversity (rs = −0.683), driven by the near-complete competitive exclusion of fermentative bacteria (rs = −0.874) and the resulting dominance of a specialized proteolytic core. Mechanistically, the bioavailability of zooplankton-derived protein favors efficient endogenous hydrolysis over costly microbial fermentation, rendering functional redundancy obsolete. Crucially, we find that while metabolic function converges, taxonomic identity remains geographically structured (r = 0.532), suggesting that local environments supply the specific taxa to fulfill universal metabolic roles. These findings establish a link between δ15N as a nutritional physiology proxy of anchoveta and its gut for microbial functional state, bridging the gap between nutritional physiology and ecosystem modeling to better inform the management of global forage fish stocks.

Our study investigates the trophic ecology of the anchoveta (Engraulis ringens). The anchoveta plays a key role in the Greater Humboldt Ecosystem and is extensively exploited by countries from the south-eastern Pacific Ocean. For a comprehensive study of trophic ecology, we employed a combined approach that included stomach content analysis, stable isotope analysis, and scaled mass index of body condition. Our results showed that the multivariate composition of the diet varies significantly between life stage and fishing zones in Chile. Copepods and euphausiids emerged as the dominant prey found in the stomachs across all fisheries zones. Stable isotope analysis revealed significant differences among different zones. The scaled mass index values were higher in the northern zone compared to the southern zones, for both juveniles and adults. This research carries significant implications for fisheries management and conservation efforts, such as the development of targeted management strategies that address variations in the trophic structure of anchoveta across different life stages and fishing zones.

Toxoplasma gondii, a parasitic protozoan, may infect most warm-blooded animals, including humans and carnivores. Our study focused on alien-invasive American minks (Neogale vison) and domestic cats (Felis catus) in the Valdivian Temperate Rainforest, Chile. The main goal was to investigate the relationship between their dietary habits and T. gondii exposure in the Valdivia River watershed. To detect T. gondii exposure, blood serum samples from 49 domestic cats and 40 American minks were analyzed using an ELISA, and stable isotope analysis of δ15N and δ13C from vibrissae was performed to determine the dietary habits of both species. Relationships between T. gondii exposure and dietary habits were explored using generalized linear mixed-effects models. American minks that were T. gondii seropositive exhibited a broader prey range compared to seropositive domestic cats, with minimal dietary overlap between the two groups. Exposure of domestic cats to T. gondii had no significant association with any isotope value or prey item in their diet. In American minks, we found a positive and significant association between the proportion of Domestic chicken (Gallus gallus domesticus) in the diet and high δ15N values with T. gondii exposure. This suggests that domestic species prey related to anthropogenic areas, and the consumption of high-trophic-level prey, may contribute to T. gondii exposure in American minks. Conversely, contrary to previous hypotheses, consumption of rodents showed no significant association with T. gondii exposure in either species. Our findings emphasize the importance of further research to investigate trophic interactions in the transmission dynamics of T. gondii in the Valdivian Temperate Rainforest.

Gas-hydrate occurrences along the Chilean margin have been widely documented, but the processes associated with fluid escapes caused by the dissociation of gas hydrates are still unknown. We report a seabed morphology growth related to fluid migration offshore Lebu associated with mud cones by analysing oxygen and deuterium stable water isotopes in pore water, bathymetric, biological and sedimentological data. A relief was observed at − 127 m water depth with five peaks. Enrichment values of δ¹⁸O (0.0–1.8‰) and δD (0.0–5.6‰) evidenced past hydrate melting. The orientation of the relief could be associated with faults and fractures, which constitute pathways for fluid migration. The benthic foraminifera observed can be associated with cold seep areas. We model that the mud cones correspond to mud growing processes related to past gas-hydrate dissociation. The integration of (i) the seismic data analysis performed in the surrounding area, (ii) the orientation of our studied relief, (iii) the infaunal foraminifera observed, (iv) the grain size and (v) the total organic matter and isotope values revealed that this area was formerly characterised by the presence of gas hydrates. Hence, this part of the Chilean margin represents a suitable area for investigating fluid-migration processes.

Fish growth analysis is a fundamental part of research in fisheries biology, aquaculture, and physiology. However, there is the question of whether the addition of mass and length depends on the amount of energy a prey can deliver. This study tested the hypothesis that there is an effect on the length/weight ratio of the predator, under the premise that fish that ingest prey with a greater amount of energy will have greater mass growth, in contrast to those that ingest food with lesser energy. The fish in this experiment was under controlled laboratory conditions under two types of food treatment and one control (low energy vs high energy amount). The energy-rich treatment had a significant effect on the mass increase (GLM; F = 2.72; P = 0.031), and the length/weight ratio was greater in the fish under the energy-rich treatment (ANCOVA; F = 3.59; P = 0.043). However, the IGR showed that fish presented low rates of intrinsic size growth (ANOVA; F = 0.189; P = 0.828).