Ziye Song
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Ziye Song has a total of 21 co-authors. Here are the top co-authors by number of shared publications:
- Bo Wang
Jilin Academy Agricultural of Science (Northeast Agricultural Research Center of China), Changchun 130033, China
2 shared publications - Chunbao Zhang
Key Laboratory of Hybrid Soybean Breeding of the Ministry of Agriculture and Rural Affairs/Soybean Research Institute, Jilin Academy of Agricultural Sciences (Northeast Agricultural Research Center of China), Changchun 130033, China
2 shared publications - Jia Liu
Affiliation Soybean Research Institute of Jilin Academy of Agriculture Sciences (Northeast Agricultural Research Center of China), Changchun, China
2 shared publications - Nianxi Liu
Jilin Academy Agricultural of Science (Northeast Agricultural Research Center of China), Changchun 130033, China
2 shared publications - Yingshan Dong
Jilin Academy of Agricultural Sciences (Northeast Agricultural Research Center of China), Soybean Research Institute
2 shared publications - Zhi Li
Jilin Academy Agricultural of Science (Northeast Agricultural Research Center of China), Changchun 130033, China
2 shared publications
Latest Publications
- Open Access
- 9 March 2026
- Published by MDPI AG in Horticulturae
- Vol. 12 (3) , 324
Study on the Improvement of Soil Physicochemical Properties in Solar Greenhouses by Carbonized Rice Hull and Fermented Rice Hull and Their Effects on the Growth and Development of Colored Pepper
Continuous cultivation in solar greenhouses degrades black soil, leading to soil-borne diseases, nutrient imbalances, reduced porosity, and microbial dysbiosis, all of which collectively decrease crop productivity. Improving soil structure and microbial balance often requires costly amendments that are inconsistent in their effectiveness. This study evaluated two low-cost soil amendments—carbonized rice hull (CRH) and fermented rice hull (FRH)—using colored pepper as a model crop. Treatments included soil mixed with 30% CRH (T1), 30% FRH (T2), and untreated black soil (CK). Both amendments significantly improved soil physical properties. Compared with CK, soil porosity increased by 8.80% in T1 and 17.84% in T2, while water-holding capacity increased by 75.32% and 133.45%, respectively. Soil microbial richness, as indicated by Abundance-based Coverage Estimator (ACE) and Chao indices, followed the order T2 > T1 > CK. Plant physiological performance was also enhanced. Net photosynthetic rate increased by 7.18% (T1) and 15.33% (T2), plant height increased by 14.42% (T1) and 28.85% (T2), and root activity improved significantly. Fruit weight increased by 15.33% in T1 and 21.62% in T2. Both rice hull amendments improved soil quality and promoted crop growth, with FRH performing consistently better. These findings indicate that fermented rice hull is a promising, low-cost strategy for greenhouse soil remediation.
- 9 March 2026
- Published by MDPI AG in Horticulturae
- Vol. 12 (3) , 324
Open AccessStudy on the Improvement of Soil Physicochemical Properties in Solar Greenhouses by Carbonized Rice Hull and Fermented Rice Hull and Their Effects on the Growth and Development of Colored Pepper
Continuous cultivation in solar greenhouses degrades black soil, leading to soil-borne diseases, nutrient imbalances, reduced porosity, and microbial dysbiosis, all of which collectively decrease crop productivity. Improving soil structure and microbial balance often requires costly amendments that are inconsistent in their effectiveness. This study evaluated two low-cost soil amendments—carbonized rice hull (CRH) and fermented rice hull (FRH)—using colored pepper as a model crop. Treatments included soil mixed with 30% CRH (T1), 30% FRH (T2), and untreated black soil (CK). Both amendments significantly improved soil physical properties. Compared with CK, soil porosity increased by 8.80% in T1 and 17.84% in T2, while water-holding capacity increased by 75.32% and 133.45%, respectively. Soil microbial richness, as indicated by Abundance-based Coverage Estimator (ACE) and Chao indices, followed the order T2 > T1 > CK. Plant physiological performance was also enhanced. Net photosynthetic rate increased by 7.18% (T1) and 15.33% (T2), plant height increased by 14.42% (T1) and 28.85% (T2), and root activity improved significantly. Fruit weight increased by 15.33% in T1 and 21.62% in T2. Both rice hull amendments improved soil quality and promoted crop growth, with FRH performing consistently better. These findings indicate that fermented rice hull is a promising, low-cost strategy for greenhouse soil remediation.
- Open Access
- 9 March 2025
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 26 (6) , 2446
Functional Verification of the Soybean Pseudo-Response Factor GmPRR7b and Regulation of Its Rhythmic Expression
The pseudo response regulator (PRR) gene is an important component of the core oscillator involved in plant circadian rhythms and plays an important role in regulating plant growth and development and stress responses. In this study, we investigated the function of GmPRR7b by overexpression and gene editing approaches. It was found that GmPRR7b plays a role in delaying flowering. While GmPRR7b overexpressing plants showed significantly delayed flowering compared to untransformed WT, GmPRR7b edited plants flowered earlier than the control WT. On the basis of previous research results and bioinformatics analysis, we re-identified 14 soybean PRR genes and analysed their rhythmic expression. Based on the rhythmic expression pattern, we found that GmPRR5/9a and GmPRR5/9b interacted with GmPRR7b by yeast two-hybrid and bimolecular fluorescence complementation (BiFC) experiments. Combined with the expression regulatory networks of the GmPRR7b, we inferred a possible regulatory mechanism by which GmPRR7b affects flowering through quit rhythm expression. These research elements provide valuable references for understanding growth, development, and circadian regulation in soybean.
- 9 March 2025
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 26 (6) , 2446
Open AccessFunctional Verification of the Soybean Pseudo-Response Factor GmPRR7b and Regulation of Its Rhythmic Expression
The pseudo response regulator (PRR) gene is an important component of the core oscillator involved in plant circadian rhythms and plays an important role in regulating plant growth and development and stress responses. In this study, we investigated the function of GmPRR7b by overexpression and gene editing approaches. It was found that GmPRR7b plays a role in delaying flowering. While GmPRR7b overexpressing plants showed significantly delayed flowering compared to untransformed WT, GmPRR7b edited plants flowered earlier than the control WT. On the basis of previous research results and bioinformatics analysis, we re-identified 14 soybean PRR genes and analysed their rhythmic expression. Based on the rhythmic expression pattern, we found that GmPRR5/9a and GmPRR5/9b interacted with GmPRR7b by yeast two-hybrid and bimolecular fluorescence complementation (BiFC) experiments. Combined with the expression regulatory networks of the GmPRR7b, we inferred a possible regulatory mechanism by which GmPRR7b affects flowering through quit rhythm expression. These research elements provide valuable references for understanding growth, development, and circadian regulation in soybean.
- Open Access
Genome-Wide Identification and Comprehensive Analysis of the PPO Gene Family in Glycine max and Glycine soja
Background: Polyphenol oxidases (PPOs) form a multigene family that is widely distributed in plants, animals, and insects. To date, PPOs have been identified in plants such as Populus L. and Solanum tuberosum L., but studies on PPOs in soybean (Glycine max (L.) Merr.) and wild soybean (Glycine soja Sieb. and Zucc.) remain limited. Methods: To clarify the nature, structure, evolution, expression pattern, and interaction network of PPOs in these plants, we performed bioinformatics analysis and evaluated the expression patterns of PPOs in soybean and wild soybean throughout the growth period and under salt stress. Results: We identified 17 and 15 genes belonging to the PPO family. These genes were distributed across chromosomes 7 and 6 and could be divided into three groups. Most of these genes only contained one coding sequence (CDS), and their gene structure, conserved motifs, and 3D structures were very similar. Although there were a few intraspecies gene duplications, 75 gene replication pairs between soybean and wild soybean were detected. A Ka/Ks analysis showed that the PPOs in these plants were mainly subjected to purity selection. Moreover, the expression of the PPO genes varied greatly during different stages of the growth period and under salt stress, showing high temporal and spatial specificity. The protein interaction networks of these genes appeared to be quite distinct. Through the interaction analysis of the candidate gene GmPPO2 selected under salt stress, Glyma.07G059000, Glyma.10G279000, and Glyma.03G167900 were identified as the candidate genes regulating salt stress tolerance in soybean. Conclusions: These findings provide a foundation for further research on the evolution of soybean and wild soybean, as well as the functions of the PPO gene family.
Open AccessGenome-Wide Identification and Comprehensive Analysis of the PPO Gene Family in Glycine max and Glycine soja
Background: Polyphenol oxidases (PPOs) form a multigene family that is widely distributed in plants, animals, and insects. To date, PPOs have been identified in plants such as Populus L. and Solanum tuberosum L., but studies on PPOs in soybean (Glycine max (L.) Merr.) and wild soybean (Glycine soja Sieb. and Zucc.) remain limited. Methods: To clarify the nature, structure, evolution, expression pattern, and interaction network of PPOs in these plants, we performed bioinformatics analysis and evaluated the expression patterns of PPOs in soybean and wild soybean throughout the growth period and under salt stress. Results: We identified 17 and 15 genes belonging to the PPO family. These genes were distributed across chromosomes 7 and 6 and could be divided into three groups. Most of these genes only contained one coding sequence (CDS), and their gene structure, conserved motifs, and 3D structures were very similar. Although there were a few intraspecies gene duplications, 75 gene replication pairs between soybean and wild soybean were detected. A Ka/Ks analysis showed that the PPOs in these plants were mainly subjected to purity selection. Moreover, the expression of the PPO genes varied greatly during different stages of the growth period and under salt stress, showing high temporal and spatial specificity. The protein interaction networks of these genes appeared to be quite distinct. Through the interaction analysis of the candidate gene GmPPO2 selected under salt stress, Glyma.07G059000, Glyma.10G279000, and Glyma.03G167900 were identified as the candidate genes regulating salt stress tolerance in soybean. Conclusions: These findings provide a foundation for further research on the evolution of soybean and wild soybean, as well as the functions of the PPO gene family.