Ruimen Zhang
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Ruimen Zhang has a total of 32 co-authors. Here are the top co-authors by number of shared publications:
- Deshun Shi
Guangxi Key Laboratory of Animal Breeding, Disease Control and Prevention, College of Animal Science and Technology, Guangxi University, 75 Xiuling Road, Nanning 530005, China
3 shared publications - Yanfei Deng
Guangxi Key Laboratory of Animal Breeding and Disease Control, College of Animal Science and Technology, Guangxi University, Nanning 530004, China
3 shared publications - Juanru Cheng
Guangxi Key Laboratory of Animal Breeding and Disease Control, College of Animal Science and Technology, Guangxi University, Nanning 530004, China
2 shared publications - Yu Pan
Chongqing Academy of Animal Sciences, Chongqing 402460, China
2 shared publications - Chaoxia Zou
Guangxi Key Laboratory of Animal Breeding, Disease Control and Prevention, Guangxi University, Nanning 530004, China
1 shared publication Fei Wu
College of Life Sciences, Northeast Agricultural University, Harbin, 150000, China; College of Animal Science and Technology, Guangxi University, Nanning, 530000, China
1 shared publication
Latest Publications
- 21 April 2026
- Published by Elsevier in Reproductive Toxicology
- Vol. 143, 109252
Melatonin corrects HT-2 toxin-induced aberrant histone modifications and DNA hypermethylation in mouse oocytes
- 21 April 2026
- Published by Elsevier in Reproductive Toxicology
- Vol. 143, 109252
Melatonin corrects HT-2 toxin-induced aberrant histone modifications and DNA hypermethylation in mouse oocytes
- Open Access
Ovulatory Signal-Driven H3K4me3 and H3K27ac Remodeling in Mural Granulosa Cells Orchestrates Oocyte Maturation and Ovulation
Ovulation and granulosa cell luteinization are induced by ovulatory signals, including luteinizing hormone (LH) and human chorionic gonadotropin (hCG). Histone modifications enable rapid, signal-responsive transcriptional reprogramming. However, the effects of LH/hCG-induced histone modification changes on the mural granulosa cells (MGCs) function remain to be fully elucidated. By mining public datasets we integrated transcriptomic and histone-modification profiles of MGCs across the ovulatory interval and tracked LH/hCG-driven gene expression at three time points (0, 4, and 12 h after-hCG). During oocyte maturation, the 4 h LH-surge constitutes a critical window for meiotic resumption, during which many genes display rapid transcriptional changes followed by a return to baseline levels. Early-response genes are enriched for cell locomotion, inflammatory responses, the activation of signaling pathways, and histone modifications. Furthermore, LH/hCG-induced transcriptome remodeling is highly correlated with dynamic gains or losses of H3K4me3 and H3K27ac. Notably, we discovered for the first time that H3K27ac marks super-enhancers (SEs) that regulate LH/hCG-induced transcriptional activation in MGCs. Finally, through complementary in vitro and in vivo pharmacological inhibition, we demonstrate that LH/hCG governs oocyte maturation and ovulation by reshaping the MGC transcriptome via H3K4me3- and H3K27ac-dependent chromatin remodeling. In summary, our study advances the understanding of how gonadotropins regulate MGC function and oocyte maturation through histone-modification-mediated transcriptional control.
Open AccessOvulatory Signal-Driven H3K4me3 and H3K27ac Remodeling in Mural Granulosa Cells Orchestrates Oocyte Maturation and Ovulation
Ovulation and granulosa cell luteinization are induced by ovulatory signals, including luteinizing hormone (LH) and human chorionic gonadotropin (hCG). Histone modifications enable rapid, signal-responsive transcriptional reprogramming. However, the effects of LH/hCG-induced histone modification changes on the mural granulosa cells (MGCs) function remain to be fully elucidated. By mining public datasets we integrated transcriptomic and histone-modification profiles of MGCs across the ovulatory interval and tracked LH/hCG-driven gene expression at three time points (0, 4, and 12 h after-hCG). During oocyte maturation, the 4 h LH-surge constitutes a critical window for meiotic resumption, during which many genes display rapid transcriptional changes followed by a return to baseline levels. Early-response genes are enriched for cell locomotion, inflammatory responses, the activation of signaling pathways, and histone modifications. Furthermore, LH/hCG-induced transcriptome remodeling is highly correlated with dynamic gains or losses of H3K4me3 and H3K27ac. Notably, we discovered for the first time that H3K27ac marks super-enhancers (SEs) that regulate LH/hCG-induced transcriptional activation in MGCs. Finally, through complementary in vitro and in vivo pharmacological inhibition, we demonstrate that LH/hCG governs oocyte maturation and ovulation by reshaping the MGC transcriptome via H3K4me3- and H3K27ac-dependent chromatin remodeling. In summary, our study advances the understanding of how gonadotropins regulate MGC function and oocyte maturation through histone-modification-mediated transcriptional control.
- Open Access
Super-Enhancer Drives THBS3 Expression to Regulate the Proliferation and Differentiation of Bovine Muscle Stem Cells
Skeletal muscle, the primary meat-producing tissue in bovines, is regulated by a complex transcriptional network during development. The role of Thrombospondin 3 (THBS3) and its associated super-enhancer (SE) in this process remains largely unknown. Here, by integrating multi-omics data, we identified THBS3 as a novel core regulator of myogenesis, orchestrated by a cognate super-enhancer (THBS3-SE). Functional assays demonstrated that THBS3 knockdown significantly promoted the proliferation and myogenic differentiation of bovine muscle stem cells (MuSCs) and accelerated their commitment to a fast-twitch fiber fate. Transcriptomic analysis linked THBS3 function to key signaling pathways controlling muscle growth, especially the mechanistic target of rapamycin (mTOR) signaling pathway. Mechanistically, we found that distal enhancers within the THBS3-SE loop to the THBS3 promoter drive its transcription, and CRISPR-based interference of these enhancers recapitulated the pro-myogenic effects of THBS3 knockdown. Collectively, our findings unveiled a THBS3-SE-mediated regulatory axis that critically governed bovine MuSCs’ fate. Targeting this axis may offer a novel strategy for improving beef production efficiency.
Open AccessSuper-Enhancer Drives THBS3 Expression to Regulate the Proliferation and Differentiation of Bovine Muscle Stem Cells
Skeletal muscle, the primary meat-producing tissue in bovines, is regulated by a complex transcriptional network during development. The role of Thrombospondin 3 (THBS3) and its associated super-enhancer (SE) in this process remains largely unknown. Here, by integrating multi-omics data, we identified THBS3 as a novel core regulator of myogenesis, orchestrated by a cognate super-enhancer (THBS3-SE). Functional assays demonstrated that THBS3 knockdown significantly promoted the proliferation and myogenic differentiation of bovine muscle stem cells (MuSCs) and accelerated their commitment to a fast-twitch fiber fate. Transcriptomic analysis linked THBS3 function to key signaling pathways controlling muscle growth, especially the mechanistic target of rapamycin (mTOR) signaling pathway. Mechanistically, we found that distal enhancers within the THBS3-SE loop to the THBS3 promoter drive its transcription, and CRISPR-based interference of these enhancers recapitulated the pro-myogenic effects of THBS3 knockdown. Collectively, our findings unveiled a THBS3-SE-mediated regulatory axis that critically governed bovine MuSCs’ fate. Targeting this axis may offer a novel strategy for improving beef production efficiency.
- Open Access
- 20 June 2025
- Published by MDPI AG in Metabolites
- Vol. 15 (7) , 421
Follicular Biochemical Characterization and Fatty Acid Metabolic Signatures of Follicles During Ovulation Process Reveal the Potential Mechanism for Ovarian Cyst Formation in Sows
Background/Objectives: As a well-known source of energy from feed, the significance of fatty acids in regulating the reproductive potential of livestock has received attention in recent years, especially follicular development. Moreover, successful ovulation is a process that is crucial for reproduction and fertility in domestic animals. Therefore, it is important to reveal the signatures of fatty acids in follicular fluid during mammalian ovulation, and this provides a possible method to prevent the occurrence of ovarian cysts in domestic animals. Methods: Pre-ovulatory follicles (n = 6) and peri-ovulatory follicles (n = 6) during normal ovulation, as well as cystic follicles (n = 6) in ovulation-deficient ovarian cyst were isolated and characterized, while follicular fluid was collected for targeted fatty acid metabolomics detection and analysis. Results: We have illustrated the anatomical and biochemical characterization of pre-ovulatory, peri-ovulatory, and cystic follicles. Subsequently, we identified changes in 51 fatty acids profiles in the follicular fluid. The highest proportion of fatty acids in the follicular fluid at three different ovulation stages is polyunsaturated fatty acids, among which the abnormality of the linoleic acid metabolism pathway was involved in ovulation defects in cystic follicles. Remarkably, we found that linoleic acid was significantly increased while arachidonic acid was significantly decreased in cystic follicles. Conclusions: Polyunsaturated fatty acids play a significant role in the follicular ovulation stage of sows. Among them, linoleic acid and arachidonic acid are closely related to the ovulation defects of cystic follicles, which suggests that identifying changes in important metabolic signatures may give us a better understanding of the pathogenesis of ovarian cyst.
- 20 June 2025
- Published by MDPI AG in Metabolites
- Vol. 15 (7) , 421
Open AccessFollicular Biochemical Characterization and Fatty Acid Metabolic Signatures of Follicles During Ovulation Process Reveal the Potential Mechanism for Ovarian Cyst Formation in Sows
Background/Objectives: As a well-known source of energy from feed, the significance of fatty acids in regulating the reproductive potential of livestock has received attention in recent years, especially follicular development. Moreover, successful ovulation is a process that is crucial for reproduction and fertility in domestic animals. Therefore, it is important to reveal the signatures of fatty acids in follicular fluid during mammalian ovulation, and this provides a possible method to prevent the occurrence of ovarian cysts in domestic animals. Methods: Pre-ovulatory follicles (n = 6) and peri-ovulatory follicles (n = 6) during normal ovulation, as well as cystic follicles (n = 6) in ovulation-deficient ovarian cyst were isolated and characterized, while follicular fluid was collected for targeted fatty acid metabolomics detection and analysis. Results: We have illustrated the anatomical and biochemical characterization of pre-ovulatory, peri-ovulatory, and cystic follicles. Subsequently, we identified changes in 51 fatty acids profiles in the follicular fluid. The highest proportion of fatty acids in the follicular fluid at three different ovulation stages is polyunsaturated fatty acids, among which the abnormality of the linoleic acid metabolism pathway was involved in ovulation defects in cystic follicles. Remarkably, we found that linoleic acid was significantly increased while arachidonic acid was significantly decreased in cystic follicles. Conclusions: Polyunsaturated fatty acids play a significant role in the follicular ovulation stage of sows. Among them, linoleic acid and arachidonic acid are closely related to the ovulation defects of cystic follicles, which suggests that identifying changes in important metabolic signatures may give us a better understanding of the pathogenesis of ovarian cyst.
- Open Access
- 27 December 2024
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 26 (1) , 153
CircTEC Inhibits the Follicular Atresia in Buffalo (Bubalus bubalis) via Targeting miR-144-5p/FZD3 Signaling Axis
The specific expression profile and function of circular RNA (circRNA) in follicular atresia remain largely unknown. Here, the circRNA expression profiles of granulosa cells derived from healthy follicles (HFs) and antral follicles (AFs) in buffalo were analyzed by RNA-seq, and the mechanism of a differentially expressed circRNA (DEcircRNA) circTEC regulating the granulosa cell function that affects follicular atresia was further explored. RNA-seq results showed that a total of 112 DEcircRNAs were identified. Among them, circTEC was highly expressed in HF, and its circular structure was confirmed by RNase R digestion assay, reversed PCR and Sanger sequencing. Functional experiments demonstrated that circTEC promotes the proliferation and steroid hormone synthesis of buffalo granulosa cells (bGCs), and it also inhibits their apoptosis. In-depth mechanism analysis showed that the expression level of circTEC in bGCs from AFs was adversely related to miR-144-5p and consistent with FZD3. CircTEC acts as an endogenous sponge of miR-144-5p to regulate the expression of the target gene FZD3 in AFs, which promotes the proliferation of bGCs and inhibits bGCs apoptosis, thereby inhibiting follicular atresia in buffalo. In summary, our study revealed the regulatory role of the circTEC/miR-144-5p/FZD3 axis during follicular atresia in buffalo. These results provided new insights into the biological mechanism underlying follicular atresia.
- 27 December 2024
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 26 (1) , 153
Open AccessCircTEC Inhibits the Follicular Atresia in Buffalo (Bubalus bubalis) via Targeting miR-144-5p/FZD3 Signaling Axis
The specific expression profile and function of circular RNA (circRNA) in follicular atresia remain largely unknown. Here, the circRNA expression profiles of granulosa cells derived from healthy follicles (HFs) and antral follicles (AFs) in buffalo were analyzed by RNA-seq, and the mechanism of a differentially expressed circRNA (DEcircRNA) circTEC regulating the granulosa cell function that affects follicular atresia was further explored. RNA-seq results showed that a total of 112 DEcircRNAs were identified. Among them, circTEC was highly expressed in HF, and its circular structure was confirmed by RNase R digestion assay, reversed PCR and Sanger sequencing. Functional experiments demonstrated that circTEC promotes the proliferation and steroid hormone synthesis of buffalo granulosa cells (bGCs), and it also inhibits their apoptosis. In-depth mechanism analysis showed that the expression level of circTEC in bGCs from AFs was adversely related to miR-144-5p and consistent with FZD3. CircTEC acts as an endogenous sponge of miR-144-5p to regulate the expression of the target gene FZD3 in AFs, which promotes the proliferation of bGCs and inhibits bGCs apoptosis, thereby inhibiting follicular atresia in buffalo. In summary, our study revealed the regulatory role of the circTEC/miR-144-5p/FZD3 axis during follicular atresia in buffalo. These results provided new insights into the biological mechanism underlying follicular atresia.