Safiye Serdengeçti
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Safiye Serdengeçti has a total of 28 co-authors. Here are the top co-authors by number of shared publications:
- Gürkan Öztürk
Istanbul Medipol University, Institute of Health Sciences and Technologies (SABITA)
3 shared publications - İlKay Kara
Department of Health Physics, Graduate School of Health Sciences, İstanbul Medipol University, Istanbul 34810, Türkiye
3 shared publications - Gizem Keçeloğlu
Istanbul Medipol University
2 shared publications - Mustafa Çağlar
Istanbul Medipol Üniversitesi
2 shared publications - Nihan Verimli
Research Institute for Health Sciences and Technologies—SABITA, İstanbul Medipol University, Istanbul 34810, Türkiye
2 shared publications - Tüba Akgül Çağlar
Research Institute for Health Sciences and Technologies—SABITA, İstanbul Medipol University, Istanbul 34810, Türkiye
2 shared publications
Latest Publications
- Open Access
- 13 October 2026
- Published by ALTEX Edition in ALTEX
- Vol. 43 (4) , 711-713
R3FINE 2026: Bridging disciplinary gaps in translational animal-free research
- 13 October 2026
- Published by ALTEX Edition in ALTEX
- Vol. 43 (4) , 711-713
Open AccessR3FINE 2026: Bridging disciplinary gaps in translational animal-free research
- Open Access
- 12 August 2026
- Published by MDPI AG in Applied Sciences
- Vol. 16 (16) , 8016
Quantitative CT Detectability of PEGylated Gold Nanoparticles: Influence of Reconstruction Parameters
Gold nanoparticles (AuNPs) have attracted considerable interest as emerging CT contrast agents; however, the influence of reconstruction parameters on their quantitative detectability remains insufficiently characterized, limiting the optimization of quantitative CT imaging. This study quantitatively compared the CT imaging performance of citrate-stabilized AuNPs, PEGylated AuNPs (PEG-AuNPs), and a conventional iodinated contrast agent (BMX) under different reconstruction conditions. AuNPs were synthesized by citrate reduction and PEGylated with SH-PEG5K-COOH, followed by physicochemical characterization using dynamic light scattering, zeta potential analysis, and ICP-OES. Contrast samples (≤10 mg/mL) were imaged using a micro-CT system (50 kV, 0.43 mA) with two angular sampling intervals (0.750° and 0.500°), Gaussian and Hann reconstruction kernels, and voxel sizes of 100, 160, and 200 µm. Quantitative performance was evaluated using sensitivity, coefficient of determination (R2), background noise, limit of detection (LOD), and limit of quantification (LOQ). PEG-AuNPs exhibited the highest sensitivity (80.55 HU/mg/mL) and the lowest detection limits (LOD: 0.53 mg/mL; LOQ: 1.61 mg/mL), outperforming bare AuNPs and BMX. Voxel size was the dominant reconstruction parameter, with optimal detectability achieved at 160 µm due to an optimal balance between spatial resolution and image noise, whereas reconstruction kernel and angular sampling had comparatively minor effects. These findings provide a quantitative framework for optimizing reconstruction parameters in nanoparticle-enhanced quantitative CT imaging.
- 12 August 2026
- Published by MDPI AG in Applied Sciences
- Vol. 16 (16) , 8016
Open AccessQuantitative CT Detectability of PEGylated Gold Nanoparticles: Influence of Reconstruction Parameters
Gold nanoparticles (AuNPs) have attracted considerable interest as emerging CT contrast agents; however, the influence of reconstruction parameters on their quantitative detectability remains insufficiently characterized, limiting the optimization of quantitative CT imaging. This study quantitatively compared the CT imaging performance of citrate-stabilized AuNPs, PEGylated AuNPs (PEG-AuNPs), and a conventional iodinated contrast agent (BMX) under different reconstruction conditions. AuNPs were synthesized by citrate reduction and PEGylated with SH-PEG5K-COOH, followed by physicochemical characterization using dynamic light scattering, zeta potential analysis, and ICP-OES. Contrast samples (≤10 mg/mL) were imaged using a micro-CT system (50 kV, 0.43 mA) with two angular sampling intervals (0.750° and 0.500°), Gaussian and Hann reconstruction kernels, and voxel sizes of 100, 160, and 200 µm. Quantitative performance was evaluated using sensitivity, coefficient of determination (R2), background noise, limit of detection (LOD), and limit of quantification (LOQ). PEG-AuNPs exhibited the highest sensitivity (80.55 HU/mg/mL) and the lowest detection limits (LOD: 0.53 mg/mL; LOQ: 1.61 mg/mL), outperforming bare AuNPs and BMX. Voxel size was the dominant reconstruction parameter, with optimal detectability achieved at 160 µm due to an optimal balance between spatial resolution and image noise, whereas reconstruction kernel and angular sampling had comparatively minor effects. These findings provide a quantitative framework for optimizing reconstruction parameters in nanoparticle-enhanced quantitative CT imaging.
- Open Access
- 1 May 2026
- Published by Elsevier in SSRN Electronic Journal
Quantitative CT Detectability of PEGylated Gold Nanoparticles: Effect of Reconstruction Parameters
PurposeTo quantitatively evaluate the CT performance of gold nanoparticles (AuNP), polyethylene glycol-coated AuNP (PEG-AuNP), and an iodinated contrast agent (Biemexol, BMX) under varying reconstruction conditions, with emphasis on sensitivity and detectability metrics.MethodsAuNPs were synthesized via citrate reduction and PEGylated using SH-PEG5K-COOH. Physicochemical properties were characterized by DLS and zeta potential measurements, and gold concentration was determined by ICP-OES. Contrast samples (≤10 mg/mL) were scanned using a micro-CT system (50 kV, 0.43 mA) with angular sampling of 0.750° and 0.500°. Images were reconstructed using filtered back projection with Gaussian and Hann kernels at voxel sizes of 100, 160, and 200 µm. Quantitative analysis was performed by extracting mean Hounsfield Unit (HU) values, and sensitivity (HU per mg/mL), coefficient of determination (R²), background noise (σ), limit of detection (LOD), and limit of quantification (LOQ) were calculated.ResultsPEG-AuNP demonstrated the highest sensitivity (75.65 HU per mg/mL) and lowest detection limits (LOD: 0.40 mg/mL; LOQ: 1.23 mg/mL), outperforming both AuNP (12.02 HU per mg/mL; LOD: 2.55 mg/mL) and BMX (50.86 HU per mg/mL; LOD: 0.60 mg/mL). All agents exhibited strong linearity (R² ≥ 0.93). Voxel size was identified as the dominant factor influencing detectability, with optimal performance consistently observed at 160 µm. In contrast, reconstruction kernel (Gaussian vs. Hann) and angular sampling showed comparatively minor effects.ConclusionCT detectability is governed by the combined effects of contrast agent properties and reconstruction parameters. PEG-AuNP provides superior quantitative performance and may enable improved detectability at lower concentrations. Optimization of voxel size is critical for maximizing contrast performance, and further validation in clinical CT systems is warranted.
- 1 May 2026
- Published by Elsevier in SSRN Electronic Journal
Open AccessQuantitative CT Detectability of PEGylated Gold Nanoparticles: Effect of Reconstruction Parameters
PurposeTo quantitatively evaluate the CT performance of gold nanoparticles (AuNP), polyethylene glycol-coated AuNP (PEG-AuNP), and an iodinated contrast agent (Biemexol, BMX) under varying reconstruction conditions, with emphasis on sensitivity and detectability metrics.MethodsAuNPs were synthesized via citrate reduction and PEGylated using SH-PEG5K-COOH. Physicochemical properties were characterized by DLS and zeta potential measurements, and gold concentration was determined by ICP-OES. Contrast samples (≤10 mg/mL) were scanned using a micro-CT system (50 kV, 0.43 mA) with angular sampling of 0.750° and 0.500°. Images were reconstructed using filtered back projection with Gaussian and Hann kernels at voxel sizes of 100, 160, and 200 µm. Quantitative analysis was performed by extracting mean Hounsfield Unit (HU) values, and sensitivity (HU per mg/mL), coefficient of determination (R²), background noise (σ), limit of detection (LOD), and limit of quantification (LOQ) were calculated.ResultsPEG-AuNP demonstrated the highest sensitivity (75.65 HU per mg/mL) and lowest detection limits (LOD: 0.40 mg/mL; LOQ: 1.23 mg/mL), outperforming both AuNP (12.02 HU per mg/mL; LOD: 2.55 mg/mL) and BMX (50.86 HU per mg/mL; LOD: 0.60 mg/mL). All agents exhibited strong linearity (R² ≥ 0.93). Voxel size was identified as the dominant factor influencing detectability, with optimal performance consistently observed at 160 µm. In contrast, reconstruction kernel (Gaussian vs. Hann) and angular sampling showed comparatively minor effects.ConclusionCT detectability is governed by the combined effects of contrast agent properties and reconstruction parameters. PEG-AuNP provides superior quantitative performance and may enable improved detectability at lower concentrations. Optimization of voxel size is critical for maximizing contrast performance, and further validation in clinical CT systems is warranted.
- Open Access
- 6 March 2026
- Published by Kocaeli University in Acta Medica Nicomedia
- Vol. 9, 1-9
MICROSTRUCTURAL EFFECTS OF SINGLE-FRACTION PHOTON IRRADIATION ON HUMAN DENTAL HARD TISSUES: A HIGH-RESOLUTION MICRO-CT STUDY
Objective: This study aimed to investigate microstructural changes in human dental hard tissues following single-fraction irradiation using high-resolution micro-computed tomography (micro-CT), with particular emphasis on potential differences between flattening filter (FF) and flattening filter-free (FFF) photon beam modalities. Methods: Sixteen extracted, non-carious human third molar teeth were included. All samples underwent baseline micro-CT imaging prior to irradiation. Teeth were then irradiated with 20 Gy in a single fraction using either 6 MV FF (600 cGy/MU) or 6 MV FFF (1400 cGy/MU) photon beams. Micro-CT images following irradiation were obtained with identical imaging conditions. Changes in bone volume (BV), total volume (TV), bone volume fraction (BV/TV), bone surface (BS), specific bone surface (BS/BV), bone mineral density (BMD), trabecular thickness (Tb.Th), and trabecular separation (Tb.Sp) were measured before and after irradiation. Results: Irradiation resulted in a substantial decrease in BV/TV and increases in BS and BS/BV (p < 0.05), suggesting micro-architectural remodeling and enhanced surface irregularity. No significant changes were detected in BV, TV, BMD, Tb.Th, or Tb.Sp. Comparison between FF and FFF beam modalities revealed no statistically significant differences in any micro-CT-derived parameter. Conclusion: Single-fraction 20 Gy irradiation induces early microstructural alterations in dental hard tissues characterized by changes in surface-related parameters rather than bulk mineral loss. Dose-rate differences between FF and FFF photon beams did not result in detectable micro-CT differences, supporting the clinical use of FFF beams at equivalent doses.
- 6 March 2026
- Published by Kocaeli University in Acta Medica Nicomedia
- Vol. 9, 1-9
Open AccessMICROSTRUCTURAL EFFECTS OF SINGLE-FRACTION PHOTON IRRADIATION ON HUMAN DENTAL HARD TISSUES: A HIGH-RESOLUTION MICRO-CT STUDY
Objective: This study aimed to investigate microstructural changes in human dental hard tissues following single-fraction irradiation using high-resolution micro-computed tomography (micro-CT), with particular emphasis on potential differences between flattening filter (FF) and flattening filter-free (FFF) photon beam modalities. Methods: Sixteen extracted, non-carious human third molar teeth were included. All samples underwent baseline micro-CT imaging prior to irradiation. Teeth were then irradiated with 20 Gy in a single fraction using either 6 MV FF (600 cGy/MU) or 6 MV FFF (1400 cGy/MU) photon beams. Micro-CT images following irradiation were obtained with identical imaging conditions. Changes in bone volume (BV), total volume (TV), bone volume fraction (BV/TV), bone surface (BS), specific bone surface (BS/BV), bone mineral density (BMD), trabecular thickness (Tb.Th), and trabecular separation (Tb.Sp) were measured before and after irradiation. Results: Irradiation resulted in a substantial decrease in BV/TV and increases in BS and BS/BV (p < 0.05), suggesting micro-architectural remodeling and enhanced surface irregularity. No significant changes were detected in BV, TV, BMD, Tb.Th, or Tb.Sp. Comparison between FF and FFF beam modalities revealed no statistically significant differences in any micro-CT-derived parameter. Conclusion: Single-fraction 20 Gy irradiation induces early microstructural alterations in dental hard tissues characterized by changes in surface-related parameters rather than bulk mineral loss. Dose-rate differences between FF and FFF photon beams did not result in detectable micro-CT differences, supporting the clinical use of FFF beams at equivalent doses.
- Open Access
- 18 June 2025
- Published by Wiley in Journal of Comparative Neurology
- Vol. 533 (6) , e70066
A Novel Method for Culturing Telencephalic Neurons in Axolotls
The axolotl ( Ambystoma mexicanum ), a neotenic salamander with remarkable regenerative capabilities, serves as a key model for studying nervous system regeneration. Despite its potential, the cellular and molecular mechanisms underlying this regenerative capacity remain poorly understood, partly due to the lack of reliable in vitro models for axolotl neural cells. In this study, we developed a novel protocol for primary cultures of adult axolotl telencephalon/pallium, enabling the maintenance of viable and functionally active neural cells. Using calcium imaging and immunocytochemistry, we demonstrated the presence of neuronal and glial markers, synaptic connections, and spontaneous calcium activity, highlighting the functional integrity of the cultured cells. Our findings reveal that these cultures can be maintained in both serum and serum‐free conditions, with neurons exhibiting robust neurite outgrowth and responsiveness to injury. This protocol addresses a critical gap in axolotl research by providing a controlled in vitro system to study neurogenesis and regeneration. By offering insights into the regenerative mechanisms of axolotl neurons, this work lays the foundation for comparative studies with mammalian systems, potentially informing therapeutic strategies for neurodegenerative diseases and CNS injuries in humans.
- 18 June 2025
- Published by Wiley in Journal of Comparative Neurology
- Vol. 533 (6) , e70066
Open AccessA Novel Method for Culturing Telencephalic Neurons in Axolotls
The axolotl ( Ambystoma mexicanum ), a neotenic salamander with remarkable regenerative capabilities, serves as a key model for studying nervous system regeneration. Despite its potential, the cellular and molecular mechanisms underlying this regenerative capacity remain poorly understood, partly due to the lack of reliable in vitro models for axolotl neural cells. In this study, we developed a novel protocol for primary cultures of adult axolotl telencephalon/pallium, enabling the maintenance of viable and functionally active neural cells. Using calcium imaging and immunocytochemistry, we demonstrated the presence of neuronal and glial markers, synaptic connections, and spontaneous calcium activity, highlighting the functional integrity of the cultured cells. Our findings reveal that these cultures can be maintained in both serum and serum‐free conditions, with neurons exhibiting robust neurite outgrowth and responsiveness to injury. This protocol addresses a critical gap in axolotl research by providing a controlled in vitro system to study neurogenesis and regeneration. By offering insights into the regenerative mechanisms of axolotl neurons, this work lays the foundation for comparative studies with mammalian systems, potentially informing therapeutic strategies for neurodegenerative diseases and CNS injuries in humans.
- Open Access
A Novel Method for Culturing Telencephalic Neurons in Axolotls
The axolotl ( Ambystoma mexicanum ), a neotenic salamander with remarkable regenerative capabilities, serves as a key model for studying nervous system regeneration. Despite its potential, the cellular and molecular mechanisms underlying this regenerative capacity remain poorly understood, partly due to the lack of reliable in vitro models for axolotl neural cells. In this study, we developed a novel protocol for primary cultures of adult axolotl telencephalon/pallium, enabling the maintenance of viable and functionally active neural cells. Using calcium imaging and immunocytochemistry, we demonstrated the presence of neuronal and glial markers, synaptic connections, and spontaneous calcium activity, highlighting the functional integrity of the cultured cells. Our findings reveal that these cultures can be maintained in both serum and serum-free conditions, with neurons exhibiting robust neurite outgrowth and responsiveness to injury. This protocol addresses a critical gap in axolotl research by providing a controlled in vitro system to study neurogenesis and regeneration. By offering insights into the regenerative mechanisms of axolotl neurons, this work lays the foundation for comparative studies with mammalian systems, potentially informing therapeutic strategies for neurodegenerative diseases and CNS injuries in humans.
Open AccessA Novel Method for Culturing Telencephalic Neurons in Axolotls
The axolotl ( Ambystoma mexicanum ), a neotenic salamander with remarkable regenerative capabilities, serves as a key model for studying nervous system regeneration. Despite its potential, the cellular and molecular mechanisms underlying this regenerative capacity remain poorly understood, partly due to the lack of reliable in vitro models for axolotl neural cells. In this study, we developed a novel protocol for primary cultures of adult axolotl telencephalon/pallium, enabling the maintenance of viable and functionally active neural cells. Using calcium imaging and immunocytochemistry, we demonstrated the presence of neuronal and glial markers, synaptic connections, and spontaneous calcium activity, highlighting the functional integrity of the cultured cells. Our findings reveal that these cultures can be maintained in both serum and serum-free conditions, with neurons exhibiting robust neurite outgrowth and responsiveness to injury. This protocol addresses a critical gap in axolotl research by providing a controlled in vitro system to study neurogenesis and regeneration. By offering insights into the regenerative mechanisms of axolotl neurons, this work lays the foundation for comparative studies with mammalian systems, potentially informing therapeutic strategies for neurodegenerative diseases and CNS injuries in humans.
- Open Access
Development of a Robust Gel-Free 3D Culture System for Generating Spheroids from Axolotl Blastema Cells
Regenerative biology seeks to uncover the principles enabling organisms to restore complex tissues and organs. The axolotl ( Ambystoma mexicanum ), a salamander with unparalleled limb regenerative capacity, remains a premier model system in this field. However, in vitro studies have been limited by the absence of reliable culture platforms for maintaining blastema cell identity and functionality. Here, we present a robust, gel-free 3D culture protocol that enables the formation of spheroids from axolotl blastema cells under fully defined, serum-free conditions. These spheroids preserve the expression of key regenerative markers such as Prrx1, Msx2 , and CTGF for at least 10 days in culture, and exhibit cellular stability supported by antioxidant and amino acid supplementation. Importantly, spheroids cultured for 10 days were capable of initiating extra digit formation when transplanted into limb bud after amputation. With unique advantage of fully defined incubation conditions, this technique adds a powerful in vitro platform to existing experimental models of axolotl limb regeneration.
Open AccessDevelopment of a Robust Gel-Free 3D Culture System for Generating Spheroids from Axolotl Blastema Cells
Regenerative biology seeks to uncover the principles enabling organisms to restore complex tissues and organs. The axolotl ( Ambystoma mexicanum ), a salamander with unparalleled limb regenerative capacity, remains a premier model system in this field. However, in vitro studies have been limited by the absence of reliable culture platforms for maintaining blastema cell identity and functionality. Here, we present a robust, gel-free 3D culture protocol that enables the formation of spheroids from axolotl blastema cells under fully defined, serum-free conditions. These spheroids preserve the expression of key regenerative markers such as Prrx1, Msx2 , and CTGF for at least 10 days in culture, and exhibit cellular stability supported by antioxidant and amino acid supplementation. Importantly, spheroids cultured for 10 days were capable of initiating extra digit formation when transplanted into limb bud after amputation. With unique advantage of fully defined incubation conditions, this technique adds a powerful in vitro platform to existing experimental models of axolotl limb regeneration.