Rehana Rehana

Sorghum (Sorghum bicolor) is an essential bioenergy crop. Cellulosic and non-cellulosic polysaccharides, which can be transformed into biofuels, comprise most of its biomass. Many glycosyltransferases (GT) families, including GT43, are involved in the biosynthesis of xylan in plants’ primary and secondary cells. In this study, the GT43 gene family was identified, and its secondary structure and a three-dimensional (3D) model were constructed. Additionally, subcellular localization, detection of motifs, and analyses of its phylogenetic tree, physiochemical properties, protein–protein interaction network, gene structure, functional domain, gene duplication, Cis-acting elements, sequence logos, multiple sequence alignment, and gene expression profiles were performed based on RNA-sequence analyses. As a result, eleven members of the GT43 gene family were identified, and the phylogenetic tree of the GT43 gene family showed that all GT43 genes had evolutionary relationships with sorghum. Analyses of gene structure, motifs, sequence logos, and multiple sequence alignment showed that all members of the GT43 protein family were highly conserved. Subcellular localization showed all members of the GT43 protein family were localized in different compartments of sorghum. The secondary structure of the GT43 genes comprised different percentages of α-helices, random coils, β-turns, and extended strands. The tertiary structure model showed that all GT43 proteins had similar 3D structures. The results of the current study indicated that members of the GT43 gene family (Sobic.010G238800, Sobic.003G254700, and Sobic.001G409100) were highly expressed in internodes of the sorghum plant, based on RNA-Sequencing. The framework used in this study will be valuable for advancing research aligned with modern technology requirements and for enhancing understanding of the relationships among GT43 genes in Sorghum bicolor.

Sorghum is an essential crop for biofuel. Many glycosyltransferase (GT) families, including GT47, are involved in the production of both types of polysaccharides. However, a comprehensive study related to the GT47 gene family is needed. The glycosyltransferase (GT) 47 family helps in the synthesis of xylose, pectin, and xyloglucan and plays an essential role in the formation of the proper shape of the plant cell wall. In this study, we performed identification, phylogenetic tree, physiochemical properties, subcellular localization, protein–protein interaction network, detection of motif analysis, gene structure, secondary structure, functional domain, gene duplication, Cis-acting elements, sequence logos, and gene expression profiles based on RNA-sequence analyses in the GT47 gene family. As a result, we identified thirty-one members of the GT47 gene family. The phylogenetic analysis grouped them into three distinct clusters. According to their physiochemical properties, all GT47 proteins were hydrophilic, and their molecular weights ranged from 22.7 to 88.6 kDa. Three essential motifs were identified via motif and conserved domain analysis, emphasizing structural conservation. Subcellular localization was proposed for the various functional roles across cellular compartments. While gene structure analysis showed significant variation in introns–exons, promoter study verified susceptibility to phytohormones like ABA. RNA sequencing revealed that several GT47 genes were highly expressed in internodes, and this was linked to biomass accumulation, cell wall manufacturing, and stem elongation. Analysis of networks of protein–protein interactions and Cis-elements confirmed involvement in stress adaptation and growth regulation. These results contribute to a better understanding of the functional and evolutionary significance of the GT47 gene family in sorghum.