Yue Yu
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Research Interests
Yue Yu has a total of 66 co-authors. Here are the top co-authors by number of shared publications:
- Chao Zhang
Georgia Institute of Technology
16 shared publications - Yuchen Zhuang
Georgia Institute of Technology
8 shared publications - Ran Xu
Emory University
7 shared publications - Carl Yang
Emory University
6 shared publications - Jieyu Zhang
University of Washington
5 shared publications - Joyce C. Ho
Emory University
5 shared publications
Latest Publications
- Open Access
- 1 January 2025
- Published by Association for Computational Linguistics (ACL)
- p. 13036-13054
RoseRAG: Robust Retrieval-augmented Generation with Small-scale LLMs via Margin-aware Preference Optimization
Tianci Liu, Haoxiang Jiang, Tianze Wang, Ran Xu, Yue Yu, Linjun Zhang, Tuo Zhao, Haoyu Wang. Findings of the Association for Computational Linguistics: ACL 2025. 2025.
- 1 January 2025
- Published by Association for Computational Linguistics (ACL)
- p. 13036-13054
Open AccessRoseRAG: Robust Retrieval-augmented Generation with Small-scale LLMs via Margin-aware Preference Optimization
Tianci Liu, Haoxiang Jiang, Tianze Wang, Ran Xu, Yue Yu, Linjun Zhang, Tuo Zhao, Haoyu Wang. Findings of the Association for Computational Linguistics: ACL 2025. 2025.
- Open Access
HiGen: Hierarchy-Aware Sequence Generation for Hierarchical Text Classification
Hierarchical text classification (HTC) is a complex subtask under multi-label text classification, characterized by a hierarchical label taxonomy and data imbalance. The best-performing models aim to learn a static representation by combining document and hierarchical label information. However, the relevance of document sections can vary based on the hierarchy level, necessitating a dynamic document representation. To address this, we propose HiGen, a text-generation-based framework utilizing language models to encode dynamic text representations. We introduce a level-guided loss function to capture the relationship between text and label name semantics. Our approach incorporates a task-specific pretraining strategy, adapting the language model to in-domain knowledge and significantly enhancing performance for classes with limited examples. Furthermore, we present a new and valuable dataset called ENZYME, designed for HTC, which comprises articles from PubMed with the goal of predicting Enzyme Commission (EC) numbers. Through extensive experiments on the ENZYME dataset and the widely recognized WOS and NYT datasets, our methodology demonstrates superior performance, surpassing existing approaches while efficiently handling data and mitigating class imbalance. The data and code will be released publicly.
Open AccessHiGen: Hierarchy-Aware Sequence Generation for Hierarchical Text Classification
Hierarchical text classification (HTC) is a complex subtask under multi-label text classification, characterized by a hierarchical label taxonomy and data imbalance. The best-performing models aim to learn a static representation by combining document and hierarchical label information. However, the relevance of document sections can vary based on the hierarchy level, necessitating a dynamic document representation. To address this, we propose HiGen, a text-generation-based framework utilizing language models to encode dynamic text representations. We introduce a level-guided loss function to capture the relationship between text and label name semantics. Our approach incorporates a task-specific pretraining strategy, adapting the language model to in-domain knowledge and significantly enhancing performance for classes with limited examples. Furthermore, we present a new and valuable dataset called ENZYME, designed for HTC, which comprises articles from PubMed with the goal of predicting Enzyme Commission (EC) numbers. Through extensive experiments on the ENZYME dataset and the widely recognized WOS and NYT datasets, our methodology demonstrates superior performance, surpassing existing approaches while efficiently handling data and mitigating class imbalance. The data and code will be released publicly.
- Open Access
How Many Validation Labels Do You Need? Exploring the Design Space of Label-Efficient Model Ranking
This paper presents LEMR (Label-Efficient Model Ranking) and introduces the MoraBench Benchmark. LEMR is a novel framework that minimizes the need for costly annotations in model selection by strategically annotating instances from an unlabeled validation set. To evaluate LEMR, we leverage the MoraBench Benchmark, a comprehensive collection of model outputs across diverse scenarios. Our extensive evaluation across 23 different NLP tasks in semi-supervised learning, weak supervision, and prompt selection tasks demonstrates LEMR's effectiveness in significantly reducing labeling costs. Key findings highlight the impact of suitable ensemble methods, uncertainty sampling strategies, and model committee selection in enhancing model ranking accuracy. LEMR, supported by the insights from MoraBench, provides a cost-effective and accurate solution for model selection, especially valuable in resource-constrained environments.
Open AccessHow Many Validation Labels Do You Need? Exploring the Design Space of Label-Efficient Model Ranking
This paper presents LEMR (Label-Efficient Model Ranking) and introduces the MoraBench Benchmark. LEMR is a novel framework that minimizes the need for costly annotations in model selection by strategically annotating instances from an unlabeled validation set. To evaluate LEMR, we leverage the MoraBench Benchmark, a comprehensive collection of model outputs across diverse scenarios. Our extensive evaluation across 23 different NLP tasks in semi-supervised learning, weak supervision, and prompt selection tasks demonstrates LEMR's effectiveness in significantly reducing labeling costs. Key findings highlight the impact of suitable ensemble methods, uncertainty sampling strategies, and model committee selection in enhancing model ranking accuracy. LEMR, supported by the insights from MoraBench, provides a cost-effective and accurate solution for model selection, especially valuable in resource-constrained environments.
- Top Cited PapersOpen Access
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- Vol. 2024, 22315-22339
EHRAgent: Code Empowers Large Language Models for Few-shot Complex Tabular Reasoning on Electronic Health Records
Wenqi Shi, Ran Xu, Yuchen Zhuang, Yue Yu, Jieyu Zhang, Hang Wu, Yuanda Zhu, Joyce C. Ho, Carl Yang, May Dongmei Wang. Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing. 2024.
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- Vol. 2024, 22315-22339
Top Cited PapersOpen AccessEHRAgent: Code Empowers Large Language Models for Few-shot Complex Tabular Reasoning on Electronic Health Records
Wenqi Shi, Ran Xu, Yuchen Zhuang, Yue Yu, Jieyu Zhang, Hang Wu, Yuanda Zhu, Joyce C. Ho, Carl Yang, May Dongmei Wang. Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing. 2024.
- Open Access
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- Vol. 2024, 22294-22314
MedAdapter: Efficient Test-Time Adaptation of Large Language Models Towards Medical Reasoning
Wenqi Shi, Ran Xu, Yuchen Zhuang, Yue Yu, Haotian Sun, Hang Wu, Carl Yang, May Dongmei Wang. Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing. 2024.
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- Vol. 2024, 22294-22314
Open AccessMedAdapter: Efficient Test-Time Adaptation of Large Language Models Towards Medical Reasoning
Wenqi Shi, Ran Xu, Yuchen Zhuang, Yue Yu, Haotian Sun, Hang Wu, Carl Yang, May Dongmei Wang. Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing. 2024.
- Open Access
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- Vol. 2024, 22234-22254
BMRetriever: Tuning Large Language Models as Better Biomedical Text Retrievers
Ran Xu, Wenqi Shi, Yue Yu, Yuchen Zhuang, Yanqiao Zhu, May Dongmei Wang, Joyce C. Ho, Chao Zhang, Carl Yang. Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing. 2024.
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- Vol. 2024, 22234-22254
Open AccessBMRetriever: Tuning Large Language Models as Better Biomedical Text Retrievers
Ran Xu, Wenqi Shi, Yue Yu, Yuchen Zhuang, Yanqiao Zhu, May Dongmei Wang, Joyce C. Ho, Chao Zhang, Carl Yang. Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing. 2024.
- Open Access
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- p. 14002-14024
Explanation-aware Soft Ensemble Empowers Large Language Model In-context Learning
Yue Yu, Jiaming Shen, Tianqi Liu, Zhen Qin, Jing Nathan Yan, Jialu Liu, Chao Zhang, Michael Bendersky. Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers). 2024.
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- p. 14002-14024
Open AccessExplanation-aware Soft Ensemble Empowers Large Language Model In-context Learning
Yue Yu, Jiaming Shen, Tianqi Liu, Zhen Qin, Jing Nathan Yan, Jialu Liu, Chao Zhang, Michael Bendersky. Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers). 2024.
- Open Access
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- p. 15992-16030
ProgGen: Generating Named Entity Recognition Datasets Step-by-step with Self-Reflexive Large Language Models
Yuzhao Heng, Chunyuan Deng, Yitong Li, Yue Yu, Yinghao Li, Rongzhi Zhang, Chao Zhang. Findings of the Association for Computational Linguistics ACL 2024. 2024.
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- p. 15992-16030
Open AccessProgGen: Generating Named Entity Recognition Datasets Step-by-step with Self-Reflexive Large Language Models
Yuzhao Heng, Chunyuan Deng, Yitong Li, Yue Yu, Yinghao Li, Rongzhi Zhang, Chao Zhang. Findings of the Association for Computational Linguistics ACL 2024. 2024.
- Open Access
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- p. 754-765
RAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records
Ran Xu, Wenqi Shi, Yue Yu, Yuchen Zhuang, Bowen Jin, May Dongmei Wang, Joyce Ho, Carl Yang. Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 2: Short Papers). 2024.
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- p. 754-765
Open AccessRAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records
Ran Xu, Wenqi Shi, Yue Yu, Yuchen Zhuang, Bowen Jin, May Dongmei Wang, Joyce Ho, Carl Yang. Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 2: Short Papers). 2024.
- Open Access
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- p. 3708-3719
ARL2: Aligning Retrievers with Black-box Large Language Models via Self-guided Adaptive Relevance Labeling
LingXi Zhang, Yue Yu, Kuan Wang, Chao Zhang. Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers). 2024.
- 1 January 2024
- Published by Association for Computational Linguistics (ACL)
- p. 3708-3719
Open AccessARL2: Aligning Retrievers with Black-box Large Language Models via Self-guided Adaptive Relevance Labeling
LingXi Zhang, Yue Yu, Kuan Wang, Chao Zhang. Proceedings of the 62nd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers). 2024.