Joschka Birk
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Joschka Birk has a total of 45 co-authors. Here are the top co-authors by number of shared publications:
- Gregor Kasieczka
Universität Hamburg
6 shared publications - Anna Hallin
Universität Hamburg
5 shared publications - David Shih
Rutgers University
4 shared publications - Ian Pang
Dept. of Physics and Astronomy NHETC Rutgers University 08854 Piscataway NJ USA
3 shared publications - Madzharova Nikol
Universität Hamburg
2 shared publications - Alexander Froch
Albert-Ludwigs-Universität Freiburg
1 shared publication
Latest Publications
- Open Access
- 20 May 2026
- Published by IOP Publishing in Machine Learning: Science and Technology
- Vol. 7 (3)
Enhancing next token prediction based pre-training for jet foundation models
Next token prediction is an attractive pre-training task for jet foundation models, in that it is simulation free and enables excellent generative capabilities that can transfer across datasets. Here we study multiple improvements to next token prediction, building on the initial work of OmniJet-α. Instead of tokenizing particles and subsequently only using the token-ID as the model input for both the generative and the classification task, we adopt a hybrid setup, which allows us to use continuous feature vectors as model input while only using token-IDs in the next token prediction target. Secondly, we explore a combined pre-training strategy that combines masked particle modeling and generative learning objectives. Taken together, these changes greatly improve the performance in downstream classification tasks without any loss in generative performance.
- 20 May 2026
- Published by IOP Publishing in Machine Learning: Science and Technology
- Vol. 7 (3)
Open AccessEnhancing next token prediction based pre-training for jet foundation models
Next token prediction is an attractive pre-training task for jet foundation models, in that it is simulation free and enables excellent generative capabilities that can transfer across datasets. Here we study multiple improvements to next token prediction, building on the initial work of OmniJet-α. Instead of tokenizing particles and subsequently only using the token-ID as the model input for both the generative and the classification task, we adopt a hybrid setup, which allows us to use continuous feature vectors as model input while only using token-IDs in the next token prediction target. Secondly, we explore a combined pre-training strategy that combines masked particle modeling and generative learning objectives. Taken together, these changes greatly improve the performance in downstream classification tasks without any loss in generative performance.
- Open Access
Enhancing next token prediction based pre-training for jet foundation models
Next token prediction is an attractive pre-training task for jet foundation models, in that it is simulation free and enables excellent generative capabilities that can transfer across datasets. Here we study multiple improvements to next token prediction, building on the initial work of OmniJet-$α$. Instead of tokenizing particles and subsequently only using the token-ID as the model input for both the generative and the classification task, we adopt a hybrid setup, which allows us to use continuous feature vectors as model input while only using token-IDs in the next token prediction target. Secondly, we explore a combined pre-training strategy that combines masked particle modeling and generative learning objectives. Taken together, these changes greatly improve the performance in downstream classification tasks without any loss in generative performance.
Open AccessEnhancing next token prediction based pre-training for jet foundation models
Next token prediction is an attractive pre-training task for jet foundation models, in that it is simulation free and enables excellent generative capabilities that can transfer across datasets. Here we study multiple improvements to next token prediction, building on the initial work of OmniJet-$α$. Instead of tokenizing particles and subsequently only using the token-ID as the model input for both the generative and the classification task, we adopt a hybrid setup, which allows us to use continuous feature vectors as model input while only using token-IDs in the next token prediction target. Secondly, we explore a combined pre-training strategy that combines masked particle modeling and generative learning objectives. Taken together, these changes greatly improve the performance in downstream classification tasks without any loss in generative performance.
- Open Access
- 7 July 2025
- Published by IOP Publishing in Machine Learning: Science and Technology
- Vol. 6 (3) , 030601
Aspen Open Jets: unlocking LHC data for foundation models in particle physics
Foundation models are deep learning models pre-trained on large amounts of data which are capable of generalizing to multiple datasets and/or downstream tasks. This work demonstrates how data collected by the CMS experiment at the Large Hadron Collider can be useful in pre-training foundation models for HEP. Specifically, we introduce the AspenOpenJets (AOJs) dataset, consisting of approximately 178 M high p T jets derived from CMS 2016 Open Data. We show how pre-training the OmniJet-α foundation model on AOJs improves performance on generative tasks with significant domain shift: generating boosted top and QCD jets from the simulated JetClass dataset. In addition to demonstrating the power of pre-training of a jet-based foundation model on actual proton–proton collision data, we provide the ML-ready derived AOJs dataset for further public use.
- 7 July 2025
- Published by IOP Publishing in Machine Learning: Science and Technology
- Vol. 6 (3) , 030601
Open AccessAspen Open Jets: unlocking LHC data for foundation models in particle physics
Foundation models are deep learning models pre-trained on large amounts of data which are capable of generalizing to multiple datasets and/or downstream tasks. This work demonstrates how data collected by the CMS experiment at the Large Hadron Collider can be useful in pre-training foundation models for HEP. Specifically, we introduce the AspenOpenJets (AOJs) dataset, consisting of approximately 178 M high p T jets derived from CMS 2016 Open Data. We show how pre-training the OmniJet-α foundation model on AOJs improves performance on generative tasks with significant domain shift: generating boosted top and QCD jets from the simulated JetClass dataset. In addition to demonstrating the power of pre-training of a jet-based foundation model on actual proton–proton collision data, we provide the ML-ready derived AOJs dataset for further public use.
- Open Access
- 4 July 2025
- Published by Stichting SciPost in SciPost Physics Core
- Vol. 8 (3) , 046
Reconstructing hadronically decaying tau leptons with a jet foundation model
The limited availability and accuracy of simulated data has motivated the use of foundation models in high energy physics, with the idea to first train a task-agnostic model on large and potentially unlabeled datasets. This enables the subsequent fine-tuning of the learned representation for specific downstream tasks, potentially requiring much smaller datasets to achieve performance comparable to models trained from scratch on larger datasets. We study how OmniJet- \alpha α , one of the proposed foundation models for particle jets, can be used on a new set of tasks, and on a new dataset, in order to reconstruct hadronically decaying \tau τ leptons. We show that the pretraining can successfully be utilized for this multi-task problem, improving the resolution of momentum reconstruction by about 50\% 50 % when the pretrained weights are fine-tuned, compared to training the model from scratch. While much work remains ahead to develop generic foundation models for high-energy physics, this early result of generalizing an existing model to a new dataset and to previously unconsidered tasks highlights the importance of testing the approaches on a diverse set of datasets and tasks.
- 4 July 2025
- Published by Stichting SciPost in SciPost Physics Core
- Vol. 8 (3) , 046
Open AccessReconstructing hadronically decaying tau leptons with a jet foundation model
The limited availability and accuracy of simulated data has motivated the use of foundation models in high energy physics, with the idea to first train a task-agnostic model on large and potentially unlabeled datasets. This enables the subsequent fine-tuning of the learned representation for specific downstream tasks, potentially requiring much smaller datasets to achieve performance comparable to models trained from scratch on larger datasets. We study how OmniJet- \alpha α , one of the proposed foundation models for particle jets, can be used on a new set of tasks, and on a new dataset, in order to reconstruct hadronically decaying \tau τ leptons. We show that the pretraining can successfully be utilized for this multi-task problem, improving the resolution of momentum reconstruction by about 50\% 50 % when the pretrained weights are fine-tuned, compared to training the model from scratch. While much work remains ahead to develop generic foundation models for high-energy physics, this early result of generalizing an existing model to a new dataset and to previously unconsidered tasks highlights the importance of testing the approaches on a diverse set of datasets and tasks.
- Top Cited PapersOpen Access
- 1 July 2025
- Published by IOP Publishing in Journal of Instrumentation
- Vol. 20 (07) , P07007
OmniJet-α_C: learning point cloud calorimeter simulations using generative transformers
We show the first use of generative transformers for generating calorimeter showers as point clouds in a high-granularity calorimeter. Using the tokenizer and generative part of the OmniJet-α model, we represent the hits in the detector as sequences of integers. This model allows variable-length sequences, which means that it supports realistic shower development and does not need to be conditioned on the number of hits. Since the tokenization represents the showers as point clouds, the model learns the geometry of the showers without being restricted to any particular voxel grid.
- 1 July 2025
- Published by IOP Publishing in Journal of Instrumentation
- Vol. 20 (07) , P07007
Top Cited PapersOpen AccessOmniJet-α_C: learning point cloud calorimeter simulations using generative transformers
We show the first use of generative transformers for generating calorimeter showers as point clouds in a high-granularity calorimeter. Using the tokenizer and generative part of the OmniJet-α model, we represent the hits in the detector as sequences of integers. This model allows variable-length sequences, which means that it supports realistic shower development and does not need to be conditioned on the number of hits. Since the tokenization represents the showers as point clouds, the model learns the geometry of the showers without being restricted to any particular voxel grid.
- Open Access
- 17 March 2025
- Published by American Physical Society (APS) in Physical Review D
- Vol. 111 (5)
Flow matching beyond kinematics: Generating jets with particle identification and trajectory displacement information
We introduce the first generative model trained on the etlass dataset. Our model generates jets at the constituent level, and it is a permutation-equivariant continuous normalizing flow (CNF) trained with the flow matching technique. It is conditioned on the jet type, so that a single model can be used to generate the ten different jet types of etlass. For the first time, we also introduce a generative model that goes beyond the kinematic features of jet constituents. The etlass dataset includes more features, such as particle-ID and track impact parameter, and we demonstrate that our CNF can accurately model all of these additional features as well. Our generative model for etlass expands on the versatility of existing jet generation techniques, enhancing their potential utility in high-energy physics research, and offering a more comprehensive understanding of the generated jets.
- 17 March 2025
- Published by American Physical Society (APS) in Physical Review D
- Vol. 111 (5)
Open AccessFlow matching beyond kinematics: Generating jets with particle identification and trajectory displacement information
We introduce the first generative model trained on the etlass dataset. Our model generates jets at the constituent level, and it is a permutation-equivariant continuous normalizing flow (CNF) trained with the flow matching technique. It is conditioned on the jet type, so that a single model can be used to generate the ten different jet types of etlass. For the first time, we also introduce a generative model that goes beyond the kinematic features of jet constituents. The etlass dataset includes more features, such as particle-ID and track impact parameter, and we demonstrate that our CNF can accurately model all of these additional features as well. Our generative model for etlass expands on the versatility of existing jet generation techniques, enhancing their potential utility in high-energy physics research, and offering a more comprehensive understanding of the generated jets.
- Open Access
- 8 October 2024
- Published by The Open Journal in Journal of Open Source Software
- Vol. 9 (102) , 5833
Umami: A Python toolkit for jet flavour tagging
Flavour-tagging, the identification of collimated sprays of particles ("jets") originating from bottom and charm quarks, is a critically important technique in the data analysis of the ATLAS experiment (ATLAS Collaboration, 2008) at the Large Hadron Collider (Evans & Bryant, 2008). It is applied in precision measurements of the Standard Model of particle physics, which is the theory describing fundamental forces and classifying all known elementary particles, as well as in searches for yet unknown phenomena. The long lifetime, high mass, and large decay multiplicity of hadrons containing bottom and charm quarks provide distinct signatures in particle detectors which can be exploited by machine learning algorithms. Excellent knowledge of the detector and the physics processes at hand enables simulations to provide a high-quality training dataset representative of recorded ATLAS data. The Umami software toolkit provides a unified data pipeline, definition of the algorithms, training and performance evaluation with a high degree of automation.
- 8 October 2024
- Published by The Open Journal in Journal of Open Source Software
- Vol. 9 (102) , 5833
Open AccessUmami: A Python toolkit for jet flavour tagging
Flavour-tagging, the identification of collimated sprays of particles ("jets") originating from bottom and charm quarks, is a critically important technique in the data analysis of the ATLAS experiment (ATLAS Collaboration, 2008) at the Large Hadron Collider (Evans & Bryant, 2008). It is applied in precision measurements of the Standard Model of particle physics, which is the theory describing fundamental forces and classifying all known elementary particles, as well as in searches for yet unknown phenomena. The long lifetime, high mass, and large decay multiplicity of hadrons containing bottom and charm quarks provide distinct signatures in particle detectors which can be exploited by machine learning algorithms. Excellent knowledge of the detector and the physics processes at hand enables simulations to provide a high-quality training dataset representative of recorded ATLAS data. The Umami software toolkit provides a unified data pipeline, definition of the algorithms, training and performance evaluation with a high degree of automation.
- Top Cited PapersOpen Access
- 2 August 2024
- Published by IOP Publishing in Machine Learning: Science and Technology
- Vol. 5 (3) , 035031
OmniJet-α: the first cross-task foundation model for particle physics
Foundation models are multi-dataset and multi-task machine learning methods that once pre-trained can be fine-tuned for a large variety of downstream applications. The successful development of such general-purpose models for physics data would be a major breakthrough as they could improve the achievable physics performance while at the same time drastically reduce the required amount of training time and data. We report significant progress on this challenge on several fronts. First, a comprehensive set of evaluation methods is introduced to judge the quality of an encoding from physics data into a representation suitable for the autoregressive generation of particle jets with transformer architectures (the common backbone of foundation models). These measures motivate the choice of a higher-fidelity tokenization compared to previous works. Finally, we demonstrate transfer learning between an unsupervised problem (jet generation) and a classic supervised task (jet tagging) with our newOmniJet-αmodel. This is the first successful transfer between two different and actively studied classes of tasks and constitutes a major step in the building of foundation models for particle physics.
- 2 August 2024
- Published by IOP Publishing in Machine Learning: Science and Technology
- Vol. 5 (3) , 035031
Top Cited PapersOpen AccessOmniJet-α: the first cross-task foundation model for particle physics
Foundation models are multi-dataset and multi-task machine learning methods that once pre-trained can be fine-tuned for a large variety of downstream applications. The successful development of such general-purpose models for physics data would be a major breakthrough as they could improve the achievable physics performance while at the same time drastically reduce the required amount of training time and data. We report significant progress on this challenge on several fronts. First, a comprehensive set of evaluation methods is introduced to judge the quality of an encoding from physics data into a representation suitable for the autoregressive generation of particle jets with transformer architectures (the common backbone of foundation models). These measures motivate the choice of a higher-fidelity tokenization compared to previous works. Finally, we demonstrate transfer learning between an unsupervised problem (jet generation) and a classic supervised task (jet tagging) with our newOmniJet-αmodel. This is the first successful transfer between two different and actively studied classes of tasks and constitutes a major step in the building of foundation models for particle physics.
- 7 July 2023
- Published by Optica Publishing Group in Optics Express
- Vol. 31 (15) , 24194-24202
High-resolution optical imaging of single magnetic flux quanta with a solid immersion lens
Magneto-optical imaging of quantized magnetic flux tubes in superconductors – Abrikosov vortices – is based on Faraday rotation of light polarization within a magneto-optical indicator placed on top of the superconductor. Due to severe aberrations induced by the thick indicator substrate, the spatial resolution of vortices is usually well beyond the optical diffraction limit. Using a high refractive index solid immersion lens placed onto the indicator garnet substrate, we demonstrate wide field optical imaging of single flux quanta in a Niobium film with a resolution better than 600 nm and sub-second acquisition periods, paving the way to high-precision and fast vortex manipulation. Vectorial field simulations are also performed to reproduce and optimize the experimental features of vortex images.
- 7 July 2023
- Published by Optica Publishing Group in Optics Express
- Vol. 31 (15) , 24194-24202
High-resolution optical imaging of single magnetic flux quanta with a solid immersion lens
Magneto-optical imaging of quantized magnetic flux tubes in superconductors – Abrikosov vortices – is based on Faraday rotation of light polarization within a magneto-optical indicator placed on top of the superconductor. Due to severe aberrations induced by the thick indicator substrate, the spatial resolution of vortices is usually well beyond the optical diffraction limit. Using a high refractive index solid immersion lens placed onto the indicator garnet substrate, we demonstrate wide field optical imaging of single flux quanta in a Niobium film with a resolution better than 600 nm and sub-second acquisition periods, paving the way to high-precision and fast vortex manipulation. Vectorial field simulations are also performed to reproduce and optimize the experimental features of vortex images.