Isaac Z. Pope
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Isaac Z. Pope has a total of 36 co-authors. Here are the top co-authors by number of shared publications:
- Alex Fornito
Monash University
2 shared publications Alex Fornito
Turner Institute for Brain and Mental Health, School of Psychological Science, Monash University, Clayton, Victoria, Australia
1 shared publicationAlexander Holmes
Turner Institute for Brain and Mental Health, School of Psychological Science, Monash University, Clayton, Victoria, Australia
1 shared publication- Alexander Holmes
Oxford Centre for Integrative Neuroimaging (OxCIN), FMRIB, Nuffield Department of Clinical Neurosciences, University of Oxford, Oxford, United Kingdom
1 shared publication Andrew Thompson
Orygen, Parkville, Victoria, Australia
1 shared publicationBarnaby Nelson
Orygen, Parkville, Victoria, Australia
1 shared publication
Latest Publications
- Open Access
Regional heterogeneity shapes macroscopic wave dynamics of the human and non-human primate cortex
Growing evidence indicates that macroscopic cortical activity is dominated by propagating waves of excitation. However, many computational models of such wave dynamics assume that the cortex is a spatially homogeneous medium, ignoring the rich regional variations in cellular, molecular, and physiological properties that are known to shape how brain activity evolves through both space and time. Here, we develop a general framework grounded in neural field theory to model how regional heterogeneities in diverse cortical properties shape spatiotemporal brain activity evolving on cortical surface meshes. This enables high resolution, vertex-level simulations without requiring predefined parcellations. The model requires only a standard mesh model of the cortical manifold and a spatial heterogeneity map, providing a biologically grounded and computationally efficient framework that can be generalised to human and non-human species. Using multiple cellular, molecular, and physiological maps in humans—and analogous maps in macaques and marmosets—we show that our model can consistently recapitulate known relationships between regional heterogeneities and variations in cortical wave speed. In particular, we find that models parameterised by heterogeneities in intracortical myelin and excitation-inhibition balance yield the largest performance improvements relative to spatially homogeneous models. Our results identify a key role for regional variations in myelin, receptor, and genetic architecture in shaping the spatial patterning of macroscale cortex-wide activity that is conserved across primate species with diverse cortical geometries.
Open AccessRegional heterogeneity shapes macroscopic wave dynamics of the human and non-human primate cortex
Growing evidence indicates that macroscopic cortical activity is dominated by propagating waves of excitation. However, many computational models of such wave dynamics assume that the cortex is a spatially homogeneous medium, ignoring the rich regional variations in cellular, molecular, and physiological properties that are known to shape how brain activity evolves through both space and time. Here, we develop a general framework grounded in neural field theory to model how regional heterogeneities in diverse cortical properties shape spatiotemporal brain activity evolving on cortical surface meshes. This enables high resolution, vertex-level simulations without requiring predefined parcellations. The model requires only a standard mesh model of the cortical manifold and a spatial heterogeneity map, providing a biologically grounded and computationally efficient framework that can be generalised to human and non-human species. Using multiple cellular, molecular, and physiological maps in humans—and analogous maps in macaques and marmosets—we show that our model can consistently recapitulate known relationships between regional heterogeneities and variations in cortical wave speed. In particular, we find that models parameterised by heterogeneities in intracortical myelin and excitation-inhibition balance yield the largest performance improvements relative to spatially homogeneous models. Our results identify a key role for regional variations in myelin, receptor, and genetic architecture in shaping the spatial patterning of macroscale cortex-wide activity that is conserved across primate species with diverse cortical geometries.
- Open Access
- 11 August 2025
- Published by Elsevier in Biological Psychiatry Global Open Science
- Vol. 5 (6) , 100589
Functional Coupling and Longitudinal Outcome Prediction in First-Episode Psychosis
- 11 August 2025
- Published by Elsevier in Biological Psychiatry Global Open Science
- Vol. 5 (6) , 100589
Open AccessFunctional Coupling and Longitudinal Outcome Prediction in First-Episode Psychosis
- Open Access
Functional Coupling and Longitudinal Outcome Prediction in First-Episode Psychosis
Background Clinical outcomesfollowing a first episode of psychosis (FEP) are highly heterogeneous between patients. The identification of prognostic biomarkers would greatly facilitate personalized treatments. Psychosis patients often display brain-wide disruptions of inter-regional functional coupling (FC), with some being linked to symptom severity and remission. FC may thus hold prognostic potential for people experiencing psychosis. Methods Ninety antipsychotic-naïve FEP patients (51% female, 15-25 years) were randomized to receive either antipsychotic or placebo tablets for 6 months alongside psychosocial interventions. A subset of these patients also completed functional magnetic resonance imaging (55 with usable data at baseline and 37 at 3 months), which was used to evaluate whether baseline FC, or 3-month change in FC, could predict 6- and 12-month changes in symptoms and functioning, quantified using the Brief Psychiatric Rating Scale and the Social and Occupational Functioning Assessment Scale, respectively. We considered three different cross-validated prediction algorithms: (i) connectome-based predictive modelling; (ii) kernel ridge regression; and (iii) multilayer meta-matching. Results All algorithms showed poor performance in predicting patients’ 6- and 12-month changes in symptoms and functioning (all rmean < 0.3), and no model achieved significance via permutation testing (all p > 0.05). Conclusions Our findings suggest that brain-wide measures of FC may not be suitable for predicting extended clinical outcomes over a 6- to 12-month period in FEP patients.
Open AccessFunctional Coupling and Longitudinal Outcome Prediction in First-Episode Psychosis
Background Clinical outcomesfollowing a first episode of psychosis (FEP) are highly heterogeneous between patients. The identification of prognostic biomarkers would greatly facilitate personalized treatments. Psychosis patients often display brain-wide disruptions of inter-regional functional coupling (FC), with some being linked to symptom severity and remission. FC may thus hold prognostic potential for people experiencing psychosis. Methods Ninety antipsychotic-naïve FEP patients (51% female, 15-25 years) were randomized to receive either antipsychotic or placebo tablets for 6 months alongside psychosocial interventions. A subset of these patients also completed functional magnetic resonance imaging (55 with usable data at baseline and 37 at 3 months), which was used to evaluate whether baseline FC, or 3-month change in FC, could predict 6- and 12-month changes in symptoms and functioning, quantified using the Brief Psychiatric Rating Scale and the Social and Occupational Functioning Assessment Scale, respectively. We considered three different cross-validated prediction algorithms: (i) connectome-based predictive modelling; (ii) kernel ridge regression; and (iii) multilayer meta-matching. Results All algorithms showed poor performance in predicting patients’ 6- and 12-month changes in symptoms and functioning (all rmean < 0.3), and no model achieved significance via permutation testing (all p > 0.05). Conclusions Our findings suggest that brain-wide measures of FC may not be suitable for predicting extended clinical outcomes over a 6- to 12-month period in FEP patients.