Timothy Hanlon
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Timothy Hanlon has a total of 44 co-authors. Here are the top co-authors by number of shared publications:
- Kent William Mouw
Department of Radiation Oncology, Dana-Farber Cancer Institute, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA, USA
24 shared publications - Alexander Gusev
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA
22 shared publications - Amin H. Nassar
Department of Internal Medicine, Section of Medical Oncology, Yale Cancer Center, Yale School of Medicine, New Haven, CT
22 shared publications - Andres Martin Acosta
Department of Pathology, Indiana University, Indianapolis, USA
22 shared publications - David J. Kwiatkowski
Division of Pulmonary and Critical Care Medicine, Brigham and Women’s Hospital, Boston, Massachusetts, USA
22 shared publications - Elias Bou Farhat
Brigham and Women’s Hospital , Boston, MA 02115
22 shared publications
Latest Publications
- Open Access
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Table S5 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Table S5. Top TFs by clique enrichment score (CES) in basal-squamous and luminal BLCA samples.
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Table S5 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Table S5. Top TFs by clique enrichment score (CES) in basal-squamous and luminal BLCA samples.
- Open Access
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Figure S2 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Figure S2. Heatmap of BLCA sample clustering based on H3K27ac data.
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Figure S2 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Figure S2. Heatmap of BLCA sample clustering based on H3K27ac data.
- Open Access
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Figure S5 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Figure S5. Sample-level allele fraction at top 100 most imbalanced SNPs. C0: luminal, C1: basal-squamous.
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Figure S5 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Figure S5. Sample-level allele fraction at top 100 most imbalanced SNPs. C0: luminal, C1: basal-squamous.
- Open Access
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Table S11 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Table S11. CWAS hits and contribution to bladder cancer risk.
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Table S11 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Table S11. CWAS hits and contribution to bladder cancer risk.
- Open Access
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Table S6 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Table S6. MARGE regulatory potential scores for basal-squamous and luminal BLCA samples.
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Table S6 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Table S6. MARGE regulatory potential scores for basal-squamous and luminal BLCA samples.
- Open Access
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Table S1 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Table S1. Clinical and tumor characteristics for 28 patients with bladder or upper tract carcinoma included in the analysis.
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Table S1 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Table S1. Clinical and tumor characteristics for 28 patients with bladder or upper tract carcinoma included in the analysis.
- Open Access
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Figure S4 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Figure S4. CRISPR dependency scores of nominated luminal and basal-squamous master TFs based on the DepMap dataset.
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Figure S4 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Figure S4. CRISPR dependency scores of nominated luminal and basal-squamous master TFs based on the DepMap dataset.
- Open Access
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Table S4 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Table S4. Top TFs by CaCTS score in basal-squamous and luminal BLCA samples.
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Table S4 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Table S4. Top TFs by CaCTS score in basal-squamous and luminal BLCA samples.
- Open Access
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Figure S9 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Figure S9. Overall survival in the bladder cancer TCGA cohort by UGT1A10 and SPINK1 expression (top vs. bottom quartiles shown).
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Figure S9 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Figure S9. Overall survival in the bladder cancer TCGA cohort by UGT1A10 and SPINK1 expression (top vs. bottom quartiles shown).
- Open Access
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Supplementary Figure S6 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Figure S6. Disruption of human NANOG motif (negative control) based on alternate allele fraction using motif score estimated from position-weighted matrix (PWM). NANOG was selected as a negative control given its lack of involvement in bladder cancer biology.
- 19 June 2026
- Published by American Association for Cancer Research (AACR)
Open AccessSupplementary Figure S6 from Epigenetic Atlas of Bladder Cancer Reveals Master Transcription Factors and Risk-Associated Regulatory Elements in Luminal and Basal-Squamous Molecular Subtypes
Supplementary Figure S6. Disruption of human NANOG motif (negative control) based on alternate allele fraction using motif score estimated from position-weighted matrix (PWM). NANOG was selected as a negative control given its lack of involvement in bladder cancer biology.