Shiyu Wei
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Shiyu Wei has a total of 50 co-authors. Here are the top co-authors by number of shared publications:
Ci Song
School of Biological and Pharmaceutical Engineering Lanzhou Jiaotong University Lanzhou Gansu China
5 shared publicationsYali You
School of Biological and Pharmaceutical Engineering Lanzhou Jiaotong University Lanzhou Gansu China
5 shared publicationsDantong Feng
School of Biological and Pharmaceutical Engineering Lanzhou Jiaotong University Lanzhou Gansu China
4 shared publicationsYali Wang
School of Biological and Pharmaceutical Engineering Lanzhou Jiaotong University Lanzhou Gansu China
4 shared publicationsYan Leng
School of Biological and Pharmaceutical Engineering Lanzhou Jiaotong University Lanzhou Gansu China
4 shared publications- Yongqiang Tian
School of Biological and Pharmaceutical Engineering, Lanzhou Jiaotong University, Lanzhou 730070, China
4 shared publications
Latest Publications
- 28 October 2026
- Published by Wiley in ChemBioChem
- Vol. 27 (21)
Characterization and Molecular Engineering of a Thermostable Amino Acid Dehydrogenase for Enhanced ( S )‐2‐Amino‐1‐Butanol Synthesis
( S )‐2‐Amino‐1‐butanol, a key intermediate for ethambutol hydrochloride synthesis, is currently produced via heavy metal‐catalyzed processes or enzymatic resolution with limited theoretical yields. While amine dehydrogenases (AmDHs) offer sustainable alternatives for asymmetric reductive amination, their applicability is often restricted by narrow substrate scope. Here, we report the discovery of a thermostable amino acid dehydrogenase from Thermoactinomyces daqus ( Td AADH) that exhibits optimal activity at pH 9.0 and 55 °C with exceptional thermostability ( t 1/2 = 21 days at 40 °C). Although inactive toward the non‐native substrate 1‐hydroxy‐2‐butanone, structure‐guided engineering via site‐directed and iterative saturation mutagenesis (ISM) successfully endowed the enzyme with desired functionality: the initial double mutant K93S/N288L (M1) acquired de novo amination activity, while subsequent evolution to the quintuple mutant M4 (incorporating L136T/T139D/M141R) enhanced specific activity by 2.75‐fold (5.38 U·g −1 ) without compromising enantioselectivity ( ee > 99%). Mechanistic investigations via molecular docking suggest that these mutations plausibly reshape the substrate‐binding pocket, alleviate steric hindrance, and optimize electrostatic interactions to accommodate the hydroxyketone substrate. Preparative‐scale biotransformation (40 °C, 30 mM substrate, coupled with GDH/glucose for cofactor recycling) achieved quantitative conversion (≥99%) within 36 h. This work expands the enzymatic toolbox for thermostable AmDHs.
- 28 October 2026
- Published by Wiley in ChemBioChem
- Vol. 27 (21)
Characterization and Molecular Engineering of a Thermostable Amino Acid Dehydrogenase for Enhanced ( S )‐2‐Amino‐1‐Butanol Synthesis
( S )‐2‐Amino‐1‐butanol, a key intermediate for ethambutol hydrochloride synthesis, is currently produced via heavy metal‐catalyzed processes or enzymatic resolution with limited theoretical yields. While amine dehydrogenases (AmDHs) offer sustainable alternatives for asymmetric reductive amination, their applicability is often restricted by narrow substrate scope. Here, we report the discovery of a thermostable amino acid dehydrogenase from Thermoactinomyces daqus ( Td AADH) that exhibits optimal activity at pH 9.0 and 55 °C with exceptional thermostability ( t 1/2 = 21 days at 40 °C). Although inactive toward the non‐native substrate 1‐hydroxy‐2‐butanone, structure‐guided engineering via site‐directed and iterative saturation mutagenesis (ISM) successfully endowed the enzyme with desired functionality: the initial double mutant K93S/N288L (M1) acquired de novo amination activity, while subsequent evolution to the quintuple mutant M4 (incorporating L136T/T139D/M141R) enhanced specific activity by 2.75‐fold (5.38 U·g −1 ) without compromising enantioselectivity ( ee > 99%). Mechanistic investigations via molecular docking suggest that these mutations plausibly reshape the substrate‐binding pocket, alleviate steric hindrance, and optimize electrostatic interactions to accommodate the hydroxyketone substrate. Preparative‐scale biotransformation (40 °C, 30 mM substrate, coupled with GDH/glucose for cofactor recycling) achieved quantitative conversion (≥99%) within 36 h. This work expands the enzymatic toolbox for thermostable AmDHs.
- Open Access
Enzymatic Modification of Potato Starch: Starch-Acting Enzyme Resources, Structure–Function Relationships and Value-Added Applications
Potato (Solanum tuberosum L.) starch is valued for its large granules, high paste viscosity, and neutral taste, yet its gelatinized form is rapidly digested and its native granules resist enzymatic attack. This review synthesizes peer-reviewed studies indexed in Scopus, Web of Science, PubMed, Crossref, and Google Scholar from January 2000 to September 2026, with emphasis on 2018 onward, classifying evidence as direct (potato starch as substrate) or extrapolated (other starch systems). Hydrolases depolymerize potato starch, generate porous granules, or supply linear chains for type 3 resistant starch, whereas 4-α-glucanotransferases, branching enzymes, amylosucrase, and cyclodextrin glucanotransferases deplete amylose, elongate exterior chains, introduce α-1,6 linkages, or produce cyclic glucans. The strongest direct evidence supports thermoreversible gels, pullulanase-assisted resistant starch, slowly digestible starch, low-digestibility starch, cyclodextrin production, and acid-assisted porous starch. Ultrasound, high hydrostatic pressure, irradiation, and hydrothermal treatments modulate enzyme accessibility but remain strongly condition-dependent. Translation is constrained by gelatinization and drying energy, reaction viscosity, enzyme cost and recovery, and heterogeneous digestibility assays. Priority actions include raw-granule-active enzymes, standardized potato-starch assays, rational enzyme cascades, structure-guided enzyme engineering, and product-specific human and life-cycle assessments.
Open AccessEnzymatic Modification of Potato Starch: Starch-Acting Enzyme Resources, Structure–Function Relationships and Value-Added Applications
Potato (Solanum tuberosum L.) starch is valued for its large granules, high paste viscosity, and neutral taste, yet its gelatinized form is rapidly digested and its native granules resist enzymatic attack. This review synthesizes peer-reviewed studies indexed in Scopus, Web of Science, PubMed, Crossref, and Google Scholar from January 2000 to September 2026, with emphasis on 2018 onward, classifying evidence as direct (potato starch as substrate) or extrapolated (other starch systems). Hydrolases depolymerize potato starch, generate porous granules, or supply linear chains for type 3 resistant starch, whereas 4-α-glucanotransferases, branching enzymes, amylosucrase, and cyclodextrin glucanotransferases deplete amylose, elongate exterior chains, introduce α-1,6 linkages, or produce cyclic glucans. The strongest direct evidence supports thermoreversible gels, pullulanase-assisted resistant starch, slowly digestible starch, low-digestibility starch, cyclodextrin production, and acid-assisted porous starch. Ultrasound, high hydrostatic pressure, irradiation, and hydrothermal treatments modulate enzyme accessibility but remain strongly condition-dependent. Translation is constrained by gelatinization and drying energy, reaction viscosity, enzyme cost and recovery, and heterogeneous digestibility assays. Priority actions include raw-granule-active enzymes, standardized potato-starch assays, rational enzyme cascades, structure-guided enzyme engineering, and product-specific human and life-cycle assessments.
- 8 July 2026
- Published by Elsevier in Molecular Catalysis
- Vol. 602
Immobilization of β-glucuronidase on a ternary alginate–chitosan–PEG carrier for glycyrrhetinic acid synthesis
- 8 July 2026
- Published by Elsevier in Molecular Catalysis
- Vol. 602
Immobilization of β-glucuronidase on a ternary alginate–chitosan–PEG carrier for glycyrrhetinic acid synthesis
- Open Access
- 4 February 2026
- Published by Elsevier in SSRN Electronic Journal
Mining, Enzymatic Characterization, and Rational Engineering of Novel Thermophilic Amino Acid Dehydrogenases for Chiral Amine Synthesis
Amine dehydrogenases (AmDHs) are efficient biocatalysts for asymmetric chiral amine synthesis. This study reports the mining and systematic characterization of three thermophilic amino acid dehydrogenases (AADHs): TmAADH, TaAADH, and MtAADH. Phylogenetically, these enzymes occupy an intermediate position between leucine and phenylalanine dehydrogenases, suggesting hybrid active-site architectures. They shared an optimal pH of 9.0 for reductive amination but differed in oxidative deamination (pH 10.5–11.0) and thermal profiles (optima 35–45 °C; stability hierarchy TmAADH > TaAADH > MtAADH). While all preferred the reductive direction (25–340-fold activity enhancement), they exhibited complementary substrate specificities: MtAADH favored branched aliphatic keto acids, TaAADH short-chain substrates, and TmAADH aromatic α-keto acids. Rational engineering of conserved carboxyl-binding sites (MtAmDH(K67S/N261L), TaAmDH(K68S/N261L) and TmAmDH (K69S/N264L)) successfully converted these AADHs into AmDHs, conferring de novo catalytic activity toward prochiral hydroxy ketones with excellent enantioselectivity (>90% ee, S-configuration). These robust biocatalysts offer promising enzymatic tools for industrial chiral amine production.
- 4 February 2026
- Published by Elsevier in SSRN Electronic Journal
Open AccessMining, Enzymatic Characterization, and Rational Engineering of Novel Thermophilic Amino Acid Dehydrogenases for Chiral Amine Synthesis
Amine dehydrogenases (AmDHs) are efficient biocatalysts for asymmetric chiral amine synthesis. This study reports the mining and systematic characterization of three thermophilic amino acid dehydrogenases (AADHs): TmAADH, TaAADH, and MtAADH. Phylogenetically, these enzymes occupy an intermediate position between leucine and phenylalanine dehydrogenases, suggesting hybrid active-site architectures. They shared an optimal pH of 9.0 for reductive amination but differed in oxidative deamination (pH 10.5–11.0) and thermal profiles (optima 35–45 °C; stability hierarchy TmAADH > TaAADH > MtAADH). While all preferred the reductive direction (25–340-fold activity enhancement), they exhibited complementary substrate specificities: MtAADH favored branched aliphatic keto acids, TaAADH short-chain substrates, and TmAADH aromatic α-keto acids. Rational engineering of conserved carboxyl-binding sites (MtAmDH(K67S/N261L), TaAmDH(K68S/N261L) and TmAmDH (K69S/N264L)) successfully converted these AADHs into AmDHs, conferring de novo catalytic activity toward prochiral hydroxy ketones with excellent enantioselectivity (>90% ee, S-configuration). These robust biocatalysts offer promising enzymatic tools for industrial chiral amine production.
- Open Access
- 20 October 2025
- Published by MDPI AG in Nanomaterials
- Vol. 15 (20) , 1596
Unique Design of Functionalized Covalent Organic Frameworks for Highly Selective Removal of Cyano-Neonicotinoids
Acetamiprid (ACE) and thiacloprid (THIA) are the dominant cyano-substituted neonicotinoids detected in fruit juices and bottled water, which raises food-safety concerns and regulatory scrutiny. Conventional purification with activated carbon or advanced oxidation shows limited selectivity and has a high energy demand. Covalent organic frameworks (COFs) offer tunable chemistry for targeted adsorption, yet no strategy exists to engineer COF sites that preferentially recognize the cyano group of ACE/THIA. Here, we synthesized a magnetic core-shell adsorbent, Fe3O4@COF(TBTD-BD)-Au, by growing cyano-affinitive Au nanoparticles on a Cl-decorated COF shell surrounding a Fe3O4 core. Under optimized conditions (pH 6.0, 25 °C), the Fe3O4@COF(TBTD-BD)-Au achieved maximum adsorption capacities of 157 mg g−1 (ACE) and 156 mg g−1 (THIA). Uptake followed pseudo-second-order kinetics and the Freundlich isotherm; thermodynamic analysis confirmed an endothermic, spontaneous process. Competitive tests showed >80% removal of ACE and THIA in the presence of four co-occurring neonicotinoids, and the adsorbent retained 91.5% of its initial capacity after six adsorption–desorption cycles. Synergistic Au-cyano coordination, Cl-mediated hydrogen bonding, and π–π stacking confinement confer high selectivity and capacity. This ligand-guided, post-functionalized COF provides promising potential in the field of food sample treatment for contaminant removal.
- 20 October 2025
- Published by MDPI AG in Nanomaterials
- Vol. 15 (20) , 1596
Open AccessUnique Design of Functionalized Covalent Organic Frameworks for Highly Selective Removal of Cyano-Neonicotinoids
Acetamiprid (ACE) and thiacloprid (THIA) are the dominant cyano-substituted neonicotinoids detected in fruit juices and bottled water, which raises food-safety concerns and regulatory scrutiny. Conventional purification with activated carbon or advanced oxidation shows limited selectivity and has a high energy demand. Covalent organic frameworks (COFs) offer tunable chemistry for targeted adsorption, yet no strategy exists to engineer COF sites that preferentially recognize the cyano group of ACE/THIA. Here, we synthesized a magnetic core-shell adsorbent, Fe3O4@COF(TBTD-BD)-Au, by growing cyano-affinitive Au nanoparticles on a Cl-decorated COF shell surrounding a Fe3O4 core. Under optimized conditions (pH 6.0, 25 °C), the Fe3O4@COF(TBTD-BD)-Au achieved maximum adsorption capacities of 157 mg g−1 (ACE) and 156 mg g−1 (THIA). Uptake followed pseudo-second-order kinetics and the Freundlich isotherm; thermodynamic analysis confirmed an endothermic, spontaneous process. Competitive tests showed >80% removal of ACE and THIA in the presence of four co-occurring neonicotinoids, and the adsorbent retained 91.5% of its initial capacity after six adsorption–desorption cycles. Synergistic Au-cyano coordination, Cl-mediated hydrogen bonding, and π–π stacking confinement confer high selectivity and capacity. This ligand-guided, post-functionalized COF provides promising potential in the field of food sample treatment for contaminant removal.
- 1 October 2025
- Published by Elsevier in Molecular Catalysis
- Vol. 587
A novel and thermostable β-glucuronidase from Thermobacillus composti precisely hydrolyzes glycyrrhizin into glycyrrhetinic acid
- 1 October 2025
- Published by Elsevier in Molecular Catalysis
- Vol. 587
A novel and thermostable β-glucuronidase from Thermobacillus composti precisely hydrolyzes glycyrrhizin into glycyrrhetinic acid
- Open Access
Optimization and Metabolite Profiling of Mycotoxin Enniatin B Biodegradation by Bacillus tequilensis
Fusarium avenaceum is the predominant fungal pathogen responsible for root rot in Angelica crops and poses a serious threat to their commercial quality and yield in China. This fungus produces enniatin B (ENN B), a toxin that could be a pathogenicity and virulence factor in plant–pathogen interactions. Yet whether ENN B exacerbates host infection and the onset of root rot in Angelica spp. caused by F. avenaceum is surprisingly understudied. Pathogenicity assays revealed that ENN B co-inoculation with F. avenaceum significantly increased the root rot disease index in Angelica sinensis from 83.33% (pathogen alone) to 92.86% (p < 0.05). Toxin degradation experiments showed that the bacteria Paenibacillus polymyxa and Bacillus tequilensis were capable of degrading 60.69% and 70.02% of ENN B, respectively. Response surface optimization (24.5 °C, 22.01 mg/L ENN B, 0.99% inoculum) enhanced degradation by B. tequilensis to 81.94%, a 11.74% improvement. Three ester compounds were identified by LC-HRMS as potential degradation products of ENN B. In planta trials demonstrated that the disease index was 50.01% for the group co-inoculated with ENN B degradation products and F. avenaceum, a 42.85% reduction compared to the group co-inoculated with ENN B and F. avenaceum. This study provides a new microbial strategy for controlling root rot in Angelica crops from a mycotoxin degradation perspective, which can be applied to promote sustainable agricultural production.
Open AccessOptimization and Metabolite Profiling of Mycotoxin Enniatin B Biodegradation by Bacillus tequilensis
Fusarium avenaceum is the predominant fungal pathogen responsible for root rot in Angelica crops and poses a serious threat to their commercial quality and yield in China. This fungus produces enniatin B (ENN B), a toxin that could be a pathogenicity and virulence factor in plant–pathogen interactions. Yet whether ENN B exacerbates host infection and the onset of root rot in Angelica spp. caused by F. avenaceum is surprisingly understudied. Pathogenicity assays revealed that ENN B co-inoculation with F. avenaceum significantly increased the root rot disease index in Angelica sinensis from 83.33% (pathogen alone) to 92.86% (p < 0.05). Toxin degradation experiments showed that the bacteria Paenibacillus polymyxa and Bacillus tequilensis were capable of degrading 60.69% and 70.02% of ENN B, respectively. Response surface optimization (24.5 °C, 22.01 mg/L ENN B, 0.99% inoculum) enhanced degradation by B. tequilensis to 81.94%, a 11.74% improvement. Three ester compounds were identified by LC-HRMS as potential degradation products of ENN B. In planta trials demonstrated that the disease index was 50.01% for the group co-inoculated with ENN B degradation products and F. avenaceum, a 42.85% reduction compared to the group co-inoculated with ENN B and F. avenaceum. This study provides a new microbial strategy for controlling root rot in Angelica crops from a mycotoxin degradation perspective, which can be applied to promote sustainable agricultural production.