Yeşim Neğiş
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Research Subjects
Yeşim Neğiş has a total of 13 co-authors. Here are the top co-authors by number of shared publications:
- Sevim Isik
Üsküdar Üniversitesi
3 shared publications - Timucin Avsar
Department of Medical Biology, School of Medicine, Bahcesehir University, Istanbul, Turkey
3 shared publications - Aslınur Selim
Graduate School of Sciences, Üsküdar University, Istanbul, Turkey
2 shared publications - Bercem Yeman Kiyak
Stem Cell Research and Application Center (ÜSKÖKMER), Üsküdar University, Istanbul, Turkey
2 shared publications - Melike Cansel Eren
Graduate School of Health Science, Üsküdar University, Istanbul, Turkey
2 shared publications - Rama Şeyhali Abutayeh
Graduate School of Sciences, Üsküdar University, Istanbul, Turkey
2 shared publications
Latest Publications
- 23 September 2026
- Published by Springer Nature in Neurochemical Research
- Vol. 51 (5) , 274
DNA Topoisomerase IIβ Suppresses Microglial Inflammatory Cytokine Release: A Potential Regulator of Neuroinflammation
DNA topoisomerase IIβ (topo IIβ) is a nuclear enzyme that regulates DNA topology and gene expression, especially in post-mitotic cells such as neurons. Although its roles in neural development and transcriptional control are well-established, its involvement in neuroinflammatory processes is still to be investigated. This study aims to investigate whether topo IIβ modulates inflammatory responses in human microglial HMC3 cells under immune-stimulated conditions, considering that microglial cells are pivotal mediators of neuroinflammation in the central nervous system (CNS). Inflammation was induced using lipopolysaccharide (LPS), interferon-gamma (IFNγ), Adenosine triphosphate (ATP), whereas topo IIβ expression was modulated by overexpression and siRNA-mediated silencing. Western blot analysis demonstrated that LPS, IFNγ, and ATP stimulation did not alter the endogenous topo IIβ protein levels, indicating that its protein levels are stable under inflammatory conditions. Analysis of cytokine release indicated that topo IIβ overexpression decreased the release of key proinflammatory cytokines, suggesting an anti-inflammatory role. Conversely, the silencing of topo IIβ resulted in increased cytokine release, suggesting that topo IIβ typically functions to mitigate microglial inflammatory responses. Significantly, treatment with Lipofectamine™ 3000 alone increased cytokine release, indicating an intrinsic immunostimulatory impact of the transfection reagent. Collectively, these findings reveal an unacknowledged function of topo IIβ in attenuating neuroinflammatory signaling in microglia and underscore the necessity for careful interpretation of cytokine data when transfection reagents are present. Topo IIβ may represent a novel therapeutic target for modulating microglial activation in neuroinflammatory diseases.
- 23 September 2026
- Published by Springer Nature in Neurochemical Research
- Vol. 51 (5) , 274
DNA Topoisomerase IIβ Suppresses Microglial Inflammatory Cytokine Release: A Potential Regulator of Neuroinflammation
DNA topoisomerase IIβ (topo IIβ) is a nuclear enzyme that regulates DNA topology and gene expression, especially in post-mitotic cells such as neurons. Although its roles in neural development and transcriptional control are well-established, its involvement in neuroinflammatory processes is still to be investigated. This study aims to investigate whether topo IIβ modulates inflammatory responses in human microglial HMC3 cells under immune-stimulated conditions, considering that microglial cells are pivotal mediators of neuroinflammation in the central nervous system (CNS). Inflammation was induced using lipopolysaccharide (LPS), interferon-gamma (IFNγ), Adenosine triphosphate (ATP), whereas topo IIβ expression was modulated by overexpression and siRNA-mediated silencing. Western blot analysis demonstrated that LPS, IFNγ, and ATP stimulation did not alter the endogenous topo IIβ protein levels, indicating that its protein levels are stable under inflammatory conditions. Analysis of cytokine release indicated that topo IIβ overexpression decreased the release of key proinflammatory cytokines, suggesting an anti-inflammatory role. Conversely, the silencing of topo IIβ resulted in increased cytokine release, suggesting that topo IIβ typically functions to mitigate microglial inflammatory responses. Significantly, treatment with Lipofectamine™ 3000 alone increased cytokine release, indicating an intrinsic immunostimulatory impact of the transfection reagent. Collectively, these findings reveal an unacknowledged function of topo IIβ in attenuating neuroinflammatory signaling in microglia and underscore the necessity for careful interpretation of cytokine data when transfection reagents are present. Topo IIβ may represent a novel therapeutic target for modulating microglial activation in neuroinflammatory diseases.
- Open Access
- 1 January 2026
- Published by Springer Nature in Molecular Neurobiology
- Vol. 63 (1)
A53T α-Synuclein Expression is Associated with Altered Dopaminergic-Like Differentiation and Reduced DNA Topoisomerase IIβ Levels in an In Vitro Model of Parkinson’s Disease
The study explores the interaction between topoisomerase IIβ (topo IIβ) and α-synuclein aggregation in Parkinson’s disease (PD) using an in vitro model overexpressing A53T mutant α-synuclein, revealing key pathological features. The overexpression of A53T mutant α-synuclein was associated with impaired neuronal differentiation, accompanied by delayed neurite outgrowth and reduced levels of MAP2 and NF-L. Transcriptomic study during differentiation revealed substantial gene expression changes, with 57 of 84 PD-associated genes exhibiting differential regulation on days 8 and 12. Dopaminergic markers like TH, BDNF, NR4A2 (Nurr1), PINK1, and SYNGR3 were notably upregulated in differentiated cells, whereas A53T mutant α-synuclein overexpression was associated with significant downregulation of 22 genes associated with PD, including TH, NR4A2, BDNF, and PINK1, suggesting alterations in neuroprotective signaling pathways. Topo IIβ expression diminished during differentiation in the presence of pathogenic α-synuclein and was associated with changes in the proposed topo IIβ-Nurr1 regulatory axis potentially contributing to early neurodevelopmental abnormalities and dopaminergic vulnerability observed in PD.
- 1 January 2026
- Published by Springer Nature in Molecular Neurobiology
- Vol. 63 (1)
Open AccessA53T α-Synuclein Expression is Associated with Altered Dopaminergic-Like Differentiation and Reduced DNA Topoisomerase IIβ Levels in an In Vitro Model of Parkinson’s Disease
The study explores the interaction between topoisomerase IIβ (topo IIβ) and α-synuclein aggregation in Parkinson’s disease (PD) using an in vitro model overexpressing A53T mutant α-synuclein, revealing key pathological features. The overexpression of A53T mutant α-synuclein was associated with impaired neuronal differentiation, accompanied by delayed neurite outgrowth and reduced levels of MAP2 and NF-L. Transcriptomic study during differentiation revealed substantial gene expression changes, with 57 of 84 PD-associated genes exhibiting differential regulation on days 8 and 12. Dopaminergic markers like TH, BDNF, NR4A2 (Nurr1), PINK1, and SYNGR3 were notably upregulated in differentiated cells, whereas A53T mutant α-synuclein overexpression was associated with significant downregulation of 22 genes associated with PD, including TH, NR4A2, BDNF, and PINK1, suggesting alterations in neuroprotective signaling pathways. Topo IIβ expression diminished during differentiation in the presence of pathogenic α-synuclein and was associated with changes in the proposed topo IIβ-Nurr1 regulatory axis potentially contributing to early neurodevelopmental abnormalities and dopaminergic vulnerability observed in PD.
- Open Access
- 10 October 2025
- Published by Springer Nature in Inflammation
- Vol. 48 (6) , 4633-4645
Early α-Synuclein Pathology Induces Neuroinflammation and Decreases Topoisomerase IIβ Expression in A53T Mice
Neuroinflammation in the pathogenesis of neurodegenerative diseases is still a subject of discussion, as it might be either the cause or the result of neurodegeneration. Misfolded or improperly aggregated α-synuclein in Parkinson’s Disease, can cause inflammatory responses, indicating a mechanistic relationship between α-synuclein pathology and neuroinflammation. The aim of this study was to investigate the role of DNA topoisomerase IIβ, the key player of DNA topology, in the neuroinflammation process in an age-dependent transgenic Parkinson’s Disease mouse model overexpressing the A53T mutant α-synuclein. In this study, transgenic and control mice were bred in three age groups as early (3 months), mid (8 months), and late (12 months) disease stages. Behavioral experiments were carried out to compare the age-related cognitive and motor coordination functions. Cytokine levels in the serum and protein expression levels in the dissected brain were analyzed by both western blot and immunofluorescence staining. A decline was observed in the cognitive and motor coordination functions depending on age. Disease-related markers at protein level appeared even in the early stage, and accordingly, a significant increase was observed in inflammatory markers and cytokine levels compared to control. DNA Topoisomerase IIβ and Nurr1 levels decreased in transgenic mice, especially more dramatically in the early stage. The combined effect of reduced Nurr1 and DNA Topoisomerase IIβ, along with increased inflammation, may provide a better understanding of the pathogenesis of Parkinson’s Disease at early-stage and requires for further investigation of the potential alterations in topo IIβ as an intervention strategy for this disease.
- 10 October 2025
- Published by Springer Nature in Inflammation
- Vol. 48 (6) , 4633-4645
Open AccessEarly α-Synuclein Pathology Induces Neuroinflammation and Decreases Topoisomerase IIβ Expression in A53T Mice
Neuroinflammation in the pathogenesis of neurodegenerative diseases is still a subject of discussion, as it might be either the cause or the result of neurodegeneration. Misfolded or improperly aggregated α-synuclein in Parkinson’s Disease, can cause inflammatory responses, indicating a mechanistic relationship between α-synuclein pathology and neuroinflammation. The aim of this study was to investigate the role of DNA topoisomerase IIβ, the key player of DNA topology, in the neuroinflammation process in an age-dependent transgenic Parkinson’s Disease mouse model overexpressing the A53T mutant α-synuclein. In this study, transgenic and control mice were bred in three age groups as early (3 months), mid (8 months), and late (12 months) disease stages. Behavioral experiments were carried out to compare the age-related cognitive and motor coordination functions. Cytokine levels in the serum and protein expression levels in the dissected brain were analyzed by both western blot and immunofluorescence staining. A decline was observed in the cognitive and motor coordination functions depending on age. Disease-related markers at protein level appeared even in the early stage, and accordingly, a significant increase was observed in inflammatory markers and cytokine levels compared to control. DNA Topoisomerase IIβ and Nurr1 levels decreased in transgenic mice, especially more dramatically in the early stage. The combined effect of reduced Nurr1 and DNA Topoisomerase IIβ, along with increased inflammation, may provide a better understanding of the pathogenesis of Parkinson’s Disease at early-stage and requires for further investigation of the potential alterations in topo IIβ as an intervention strategy for this disease.