Rui Ma
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Rui Ma has a total of 10 co-authors. Here are the top co-authors by number of shared publications:
- Kexin Zhang
School of Chinese Materia Medica, Nanjing University of Chinese Medicine, Nanjing 210023, China
3 shared publications - Lina Wang
School of Chinese Materia Medica, Nanjing University of Chinese Medicine, Nanjing 210023, China
3 shared publications - Qingshan Bill Fu
Shanghai Institute of Materia Medica, Zhongshan Institute for Drug Discovery
3 shared publications - Jiayi Xie
School of Pharmaceutical Sciences, Southern Medical University, Guangzhou 510515, China
2 shared publications - Lian Wu
Zhongshan Institute for Drug Discovery, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Zhongshan 528400, China
2 shared publications - Lingli Zheng
Zhongshan Institute for Drug Discovery, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Zhongshan 528400, China
2 shared publications
Latest Publications
- Open Access
- 1 May 2026
- Published by MDPI AG in Current Issues in Molecular Biology
- Vol. 48 (5) , 472
Brucella Omp25c Modulates Host NAD+/NADH Homeostasis via Interaction with the Mitochondrial Complex I Assembly Factor Ndufaf2
Brucellosis, acting as a typical chronic zoonotic disease, is caused by the invasion of Brucella into the human body. Outer membrane protein 25 (Omp25), specifically localized on the Brucella membrane, is the main virulence factor of Brucella and participates in multiple links of the damage process. Omp25c, a porin protein of Brucella, is a paralog of Omp25 with high sequence identity. NADH dehydrogenase [ubiquinone] complex I assembly factor 2 (Ndufaf2) has a key function in cell energy metabolism, particularly in the formation and activity of the mitochondrial respiratory chain. Loss of Ndufaf2 results in oxidative stress and mitochondrial DNA (mtDNA) deletion. However, the functional relationship between Omp25c and Ndufaf2, the underlying mechanism of the proteins, remains unclear. In this work, we purified the Omp25c and Ndufaf2proteins. Our data revealed that Omp25c directly interacts with Ndufaf2, as determined using Biacore analysis. In addition, assays revealed that Ompa2c reshapes the host cell’s redox environment by decreasing the oxidized nicotinamide adenine dinucleotide/reduced nicotinamide adenine dinucleotide (NAD+/NADH) ratioand adenosine triphosphate (ATP) production, whereas Ndufaf2 exerts an opposing regulatory effect; Co-expression results further revealed an antagonistic relationship between the two during metabolic processes. These findings provide a new perspective for elucidating the mechanisms of mitochondrial functional regulation in Brucella–host interactions and lay the theoretical and experimental foundation for drug development targeting metabolic interventions to eliminate intracellular pathogens.
- 1 May 2026
- Published by MDPI AG in Current Issues in Molecular Biology
- Vol. 48 (5) , 472
Open AccessBrucella Omp25c Modulates Host NAD+/NADH Homeostasis via Interaction with the Mitochondrial Complex I Assembly Factor Ndufaf2
Brucellosis, acting as a typical chronic zoonotic disease, is caused by the invasion of Brucella into the human body. Outer membrane protein 25 (Omp25), specifically localized on the Brucella membrane, is the main virulence factor of Brucella and participates in multiple links of the damage process. Omp25c, a porin protein of Brucella, is a paralog of Omp25 with high sequence identity. NADH dehydrogenase [ubiquinone] complex I assembly factor 2 (Ndufaf2) has a key function in cell energy metabolism, particularly in the formation and activity of the mitochondrial respiratory chain. Loss of Ndufaf2 results in oxidative stress and mitochondrial DNA (mtDNA) deletion. However, the functional relationship between Omp25c and Ndufaf2, the underlying mechanism of the proteins, remains unclear. In this work, we purified the Omp25c and Ndufaf2proteins. Our data revealed that Omp25c directly interacts with Ndufaf2, as determined using Biacore analysis. In addition, assays revealed that Ompa2c reshapes the host cell’s redox environment by decreasing the oxidized nicotinamide adenine dinucleotide/reduced nicotinamide adenine dinucleotide (NAD+/NADH) ratioand adenosine triphosphate (ATP) production, whereas Ndufaf2 exerts an opposing regulatory effect; Co-expression results further revealed an antagonistic relationship between the two during metabolic processes. These findings provide a new perspective for elucidating the mechanisms of mitochondrial functional regulation in Brucella–host interactions and lay the theoretical and experimental foundation for drug development targeting metabolic interventions to eliminate intracellular pathogens.
- Open Access
- 1 May 2026
- Published by MDPI AG in Microorganisms
- Vol. 14 (5) , 1031
Functional Characterization of the Histidine Kinase BaeS Reveals Critical Residues for BaeSR-Dependent Stress Signaling in Escherichia coli
Escherichia coli, a facultative anaerobic Gram-negative member of the Enterobacteriaceae, is an increasingly important opportunistic pathogen driven in part by rising resistance to clinically important antibiotics. Regulation of multidrug efflux systems by two-component signal transduction pathways, particularly the BaeSR system, plays a central role in this process. However, the functional residues governing signal transduction through the sensor kinase BaeS remain incompletely defined. In this study, we integrated domain prediction, homology-guided site-directed mutagenesis, in vitro protein purification, autophosphorylation assays, and reverse-transcription quantitative polymerase chain reaction (RT-qPCR)-based transcriptional analysis of selected BaeSR-regulated genes to delineate key residues required for BaeS function. Sequence analysis identified His250 as a candidate autophosphorylation site and Asn364 as a conserved residue within the catalytic domain. Biochemical characterization of purified wild-type BaeS and an H250A mutant demonstrated that His250 is indispensable for autophosphorylation. Consistently, RT-qPCR analysis showed that BaeS activation markedly induced the transcription of BaeSR-regulated efflux-associated genes, whereas genetic deletion of baeS or selective disruption of kinase activity by the N364A mutation abolished this response. Together, these findings establish His250 as a key residue for BaeS autophosphorylation and identify Asn364 as essential for inducible BaeSR signaling and activation of resistance-associated target genes, thereby establishing an experimental framework for elucidating BaeSR-mediated efflux regulation and informing future studies of resistance regulatory networks and potential intervention strategies centered on key signaling nodes.
- 1 May 2026
- Published by MDPI AG in Microorganisms
- Vol. 14 (5) , 1031
Open AccessFunctional Characterization of the Histidine Kinase BaeS Reveals Critical Residues for BaeSR-Dependent Stress Signaling in Escherichia coli
Escherichia coli, a facultative anaerobic Gram-negative member of the Enterobacteriaceae, is an increasingly important opportunistic pathogen driven in part by rising resistance to clinically important antibiotics. Regulation of multidrug efflux systems by two-component signal transduction pathways, particularly the BaeSR system, plays a central role in this process. However, the functional residues governing signal transduction through the sensor kinase BaeS remain incompletely defined. In this study, we integrated domain prediction, homology-guided site-directed mutagenesis, in vitro protein purification, autophosphorylation assays, and reverse-transcription quantitative polymerase chain reaction (RT-qPCR)-based transcriptional analysis of selected BaeSR-regulated genes to delineate key residues required for BaeS function. Sequence analysis identified His250 as a candidate autophosphorylation site and Asn364 as a conserved residue within the catalytic domain. Biochemical characterization of purified wild-type BaeS and an H250A mutant demonstrated that His250 is indispensable for autophosphorylation. Consistently, RT-qPCR analysis showed that BaeS activation markedly induced the transcription of BaeSR-regulated efflux-associated genes, whereas genetic deletion of baeS or selective disruption of kinase activity by the N364A mutation abolished this response. Together, these findings establish His250 as a key residue for BaeS autophosphorylation and identify Asn364 as essential for inducible BaeSR signaling and activation of resistance-associated target genes, thereby establishing an experimental framework for elucidating BaeSR-mediated efflux regulation and informing future studies of resistance regulatory networks and potential intervention strategies centered on key signaling nodes.
- Open Access
- 1 May 2026
- Published by MDPI AG in Current Issues in Molecular Biology
- Vol. 48 (5) , 469
Protein NS4A of ZIKV Inhibits Glycolytic Flux by Targeting Enolase-1
NS4A plays a role in forming the flavivirus replication complex, which inhibits apoptosis in host cells by inducing autophagy, thereby promoting viral replication. The host protein ENO1 interacts with NS4A, but the precise mechanism underlying this interaction and its role in viral replication remain unclear. In this study, we identified ZIKV NS4A1–73 as a key regulator of replication and infection cycles in both temporal and spatial dimensions. Through surface plasmon resonance (SPR) analysis, we demonstrated that ENO1 directly interacts with NS4A1–73. This critical binding inhibits the enzymatic activity of ENO1 and reduces cellular lactate and ATP production. Our findings suggest that ZIKV NS4A may effectively impede cellular metabolism by targeting the host factor ENO1, thus disrupting the glycolytic process. This insight could open new avenues for targeting ZIKV and similar viruses in therapeutic strategies.
- 1 May 2026
- Published by MDPI AG in Current Issues in Molecular Biology
- Vol. 48 (5) , 469
Open AccessProtein NS4A of ZIKV Inhibits Glycolytic Flux by Targeting Enolase-1
NS4A plays a role in forming the flavivirus replication complex, which inhibits apoptosis in host cells by inducing autophagy, thereby promoting viral replication. The host protein ENO1 interacts with NS4A, but the precise mechanism underlying this interaction and its role in viral replication remain unclear. In this study, we identified ZIKV NS4A1–73 as a key regulator of replication and infection cycles in both temporal and spatial dimensions. Through surface plasmon resonance (SPR) analysis, we demonstrated that ENO1 directly interacts with NS4A1–73. This critical binding inhibits the enzymatic activity of ENO1 and reduces cellular lactate and ATP production. Our findings suggest that ZIKV NS4A may effectively impede cellular metabolism by targeting the host factor ENO1, thus disrupting the glycolytic process. This insight could open new avenues for targeting ZIKV and similar viruses in therapeutic strategies.