Identification and Expression Analyses of SBP-Box Genes Reveal Their Involvement in Abiotic Stress and Hormone Response in Tea Plant (Camellia sinensis)
Open Access
- 30 October 2018
- journal article
- research article
- Published by MDPI AG in International Journal of Molecular Sciences
- Vol. 19 (11) , 3404
Abstract
The SQUAMOSA promoter binding protein (SBP)-box gene family is a plant-specific transcription factor family. This family plays a crucial role in plant growth and development. In this study, 20 SBP-box genes were identified in the tea plant genome and classified into six groups. The genes in each group shared similar exon-intron structures and motif positions. Expression pattern analyses in five different tissues demonstrated that expression in the buds and leaves was higher than that in other tissues. The cis-elements and expression patterns of the CsSBP genes suggested that the CsSBP genes play active roles in abiotic stress responses; these responses may depend on the abscisic acid (ABA), gibberellic acid (GA), and methyl jasmonate (MeJA) signaling pathways. Our work provides a comprehensive understanding of the CsSBP family and will aid in genetically improving tea plants.Keywords
Funding Information
- National Natural Science Foundation of China (31270735)
- Fujian Province “2011 Collaborative Innovation Center”, Chinese Oolong Tea Industry Innovation Center (Cultivation) special project (J2015-75)
- Fujian Natural Science Foundation of China (2016J01107)
This publication has 55 references indexed in Scilit:
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and CufflinksNature Protocols, 2012
- miR156-Targeted and Nontargeted SBP-Box Transcription Factors Act in Concert to Secure Male Fertility in ArabidopsisThe Plant Cell, 2010
- MEME SUITE: tools for motif discovery and searchingNucleic Acids Research, 2009
- SQUAMOSA Promoter Binding Protein–Like7 Is a Central Regulator for Copper Homeostasis in ArabidopsisThe Plant Cell, 2009
- The evolution of gene regulation by transcription factors and microRNAsNature Reviews Genetics, 2007
- Temporal regulation of shoot development inArabidopsis thalianabymiR156and its targetSPL3Development, 2006
- Genomic Organization, Differential Expression, and Interaction of SQUAMOSA Promoter-Binding-Like Transcription Factors and microRNA156 in RicePlant Physiology, 2006
- The map-based sequence of the rice genomeNature, 2005
- WebLogo: A Sequence Logo Generator: Figure 1Genome Research, 2004
- Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT MethodMethods, 2001