Beagle: a near-edge X-ray absorption fine-structure spectroscopy data processing solution for beamline experiments at Pohang Accelerator Laboratory
Open Access
- 1 January 2024
- journal article
- research article
- Published by International Union of Crystallography (IUCr) in Journal of Synchrotron Radiation
- Vol. 31 (1) , 202-207
Abstract
Near-edge X-ray absorption fine-structure (NEXAFS) spectroscopy is a powerful tool for identifying chemical bonding states at synchrotron radiation facilities. Advances in new materials require researchers in both academia and industry to measure tens to hundreds of samples during the available beam time on a synchrotron beamline, which is typically allocated to users. Automated measurement methods, along with analysis software, have been developed for beamlines. Automated measurements facilitate high-throughput experiments and accumulate vast amounts of measured spectral data. The analysis software supports various functions for analyzing the experimental data; however, these analysis methods are complicated, and learning them can be time-consuming. To process large amounts of spectral data, a new analysis software, dedicated to NEXAFS spectroscopy, that is easy to use and can provide results in a short time is desired. Herein, the development of Beagle is described, software calculating molecular orientation from NEXAFS spectroscopy data that can report results in a short time comparable with that required to measure one sample at the beamline. It was designed to progress in a single sequence from data loading to the printing of the results with a `click of a button'. The functions of the software include recognizing the dataset, correcting the background, normalizing the plot, calculating the electron yield and determining the molecular orientation. The analysis results can be saved as {\tt{.txt}} files (spectral data), {\tt{.pdf}} files (graphic images) and Origin files (spectral data and graphic images).Keywords
Funding Information
- Korea Atomic Energy Research Institute (523420-23)
- Commercialization Promotion Agency for R&D Outcomes (1711198584)
This publication has 28 references indexed in Scilit:
- Thermally Induced Desulfurization: Structural Transformation of Thiophene on the Si(100) SurfaceThe Journal of Physical Chemistry C, 2013
- TXM-Wizard: a program for advanced data collection and evaluation in full-field transmission X-ray microscopyJournal of Synchrotron Radiation, 2012
- Comprehensive classification of DLC films formed by various methods using NEXAFS measurementDiamond and Related Materials, 2008
- Chemisorption of acetic acid onat room temperaturePhysical Review B, 2008
- Lithium K(1s) synchrotron NEXAFS spectra of lithium-ion battery cathode, anode and electrolyte materialsJournal of Power Sources, 2007
- ATHENA,ARTEMIS,HEPHAESTUS: data analysis for X-ray absorption spectroscopy usingIFEFFITJournal of Synchrotron Radiation, 2005
- Multiple-scattering calculations of x-ray-absorption spectraPhysical Review B, 1995
- Nexafs microscopy of polymeric samplesSynchrotron Radiation News, 1994
- Near-edge x-ray-absorption fine structure of Pb: A comparison of theory and experimentPhysical Review B, 1993
- Soft x-ray absorption spectroscopy. Electronic and morphological structure of poly(vinylidene fluoride)Journal of the American Chemical Society, 1980