Michael S. Kirk
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Research Subjects
Michael S. Kirk has a total of 429 co-authors. Here are the top co-authors by number of shared publications:
- Barbara J. Thompson
NASA Goddard Space Flight Center
7 shared publications - Daniel da Silva
NASA Goddard Space Flight Center
7 shared publications - James Paul Mason
Johns Hopkins University Applied Physics Laboratory
6 shared publications - Charles Nickolos Arge
NASA Goddard Space Flight Center
5 shared publications - Jeremy A. Grajeda
Klipsch School of Electrical and Computer Engineering, New Mexico State University, Las Cruces, USA
5 shared publications - Laura Boucheron-Spence
Klipsch School of Electrical and Computer Engineering, New Mexico State University, Las Cruces, USA
5 shared publications
Latest Publications
- Open Access
- 11 March 2026
- Published by Elsevier in Advances In Space Research
Assessment of space weather modeling capabilities and transition to operations
- 11 March 2026
- Published by Elsevier in Advances In Space Research
Open AccessAssessment of space weather modeling capabilities and transition to operations
- Open Access
Spectral and Spatial Graph Learning for Multispectral Solar Image Compression
High-fidelity compression of multispectral solar imagery remains challenging for space missions, where limited bandwidth must be balanced against preserving fine spectral and spatial details. We present a learned image compression framework tailored to solar observations, leveraging two complementary modules: (1) the Inter-Spectral Windowed Graph Embedding (iSWGE), which explicitly models inter-band relationships by representing spectral channels as graph nodes with learned edge features; and (2) the Windowed Spatial Graph Attention and Convolutional Block Attention (WSGA-C), which combines sparse graph attention with convolutional attention to reduce spatial redundancy and emphasize fine-scale structures. Evaluations on the SDOML dataset across six extreme ultraviolet (EUV) channels show that our approach achieves a 20.15%reduction in Mean Spectral Information Divergence (MSID), up to 1.09% PSNR improvement, and a 1.62% log transformed MS-SSIM gain over strong learned baselines, delivering sharper and spectrally faithful reconstructions at comparable bits-per-pixel rates. The code is publicly available at https://github.com/agyat4/sgraph .
Open AccessSpectral and Spatial Graph Learning for Multispectral Solar Image Compression
High-fidelity compression of multispectral solar imagery remains challenging for space missions, where limited bandwidth must be balanced against preserving fine spectral and spatial details. We present a learned image compression framework tailored to solar observations, leveraging two complementary modules: (1) the Inter-Spectral Windowed Graph Embedding (iSWGE), which explicitly models inter-band relationships by representing spectral channels as graph nodes with learned edge features; and (2) the Windowed Spatial Graph Attention and Convolutional Block Attention (WSGA-C), which combines sparse graph attention with convolutional attention to reduce spatial redundancy and emphasize fine-scale structures. Evaluations on the SDOML dataset across six extreme ultraviolet (EUV) channels show that our approach achieves a 20.15%reduction in Mean Spectral Information Divergence (MSID), up to 1.09% PSNR improvement, and a 1.62% log transformed MS-SSIM gain over strong learned baselines, delivering sharper and spectrally faithful reconstructions at comparable bits-per-pixel rates. The code is publicly available at https://github.com/agyat4/sgraph .
- 10 December 2025
- Published by American Astronomical Society
- Vol. 57
Uniting Under the Eclipse: A Mega-Collaboration to Activate Science Learning Across the Penumbra and Beyond
- 10 December 2025
- Published by American Astronomical Society
- Vol. 57
Uniting Under the Eclipse: A Mega-Collaboration to Activate Science Learning Across the Penumbra and Beyond
- Open Access
Diffusion Modeling of the Three-Dimensional Magnetic Field in the Sun's Corona
In this work, we introduce a novel generative denoising diffusion model for synthesizing the Sun's three-dimensional coronal magnetic field, a complex and dynamic region characterized by evolving magnetic structures. Despite daily variability, these structures exhibit recurring patterns and long-term cyclic trends, presenting unique modeling challenges and opportunities at the intersection of physics and machine learning. Our generative approach employs an innovative architecture influenced by Spherical Fourier Neural Operators (SFNO), operating within the spherical harmonic domain, where the scalar field corresponds directly to the magnetic potential under physical constraints. We trained this model using an extensive dataset comprising 11.7 years of daily coupled simulations from the Air Force Data Assimilative Photospheric Flux Transport-Wang Sheeley Arge (ADAPT-WSA) model, further enhanced by data augmentation. Initial results demonstrate the model's capability to conditionally generate physically realistic magnetic fields reflective of distinct phases within the 11-year solar cycle: from solar minimum ($S = 0$) to solar maximum ($S = 1$). This approach represents a significant step toward advanced generative three-dimensional modeling in Heliophysics, with potential applications in solar forecasting, data assimilation, inverse problem-solving, and broader impacts in areas such as procedural generation of physically-informed graphical assets.
Open AccessDiffusion Modeling of the Three-Dimensional Magnetic Field in the Sun's Corona
In this work, we introduce a novel generative denoising diffusion model for synthesizing the Sun's three-dimensional coronal magnetic field, a complex and dynamic region characterized by evolving magnetic structures. Despite daily variability, these structures exhibit recurring patterns and long-term cyclic trends, presenting unique modeling challenges and opportunities at the intersection of physics and machine learning. Our generative approach employs an innovative architecture influenced by Spherical Fourier Neural Operators (SFNO), operating within the spherical harmonic domain, where the scalar field corresponds directly to the magnetic potential under physical constraints. We trained this model using an extensive dataset comprising 11.7 years of daily coupled simulations from the Air Force Data Assimilative Photospheric Flux Transport-Wang Sheeley Arge (ADAPT-WSA) model, further enhanced by data augmentation. Initial results demonstrate the model's capability to conditionally generate physically realistic magnetic fields reflective of distinct phases within the 11-year solar cycle: from solar minimum ($S = 0$) to solar maximum ($S = 1$). This approach represents a significant step toward advanced generative three-dimensional modeling in Heliophysics, with potential applications in solar forecasting, data assimilation, inverse problem-solving, and broader impacts in areas such as procedural generation of physically-informed graphical assets.
- Open Access
- 8 September 2025
- Published by Springer Nature in Solar Physics
- Vol. 300 (9) , 1-31
Incorporating Magnetic-Field Characteristics into EUV-Based Automated Segmentation of Coronal Holes
Coronal holes (CHs) are magnetically open regions that allow hot coronal plasma to escape from the Sun and form the high-speed solar wind. This wind can interact with Earth’s magnetic field. For this reason, developing an accurate understanding of CH regions is vital for understanding space weather and its effects on Earth. The process of identifying CH regions typically relies on extreme ultraviolet (EUV) imagery, leveraging the fact that CHs appear dark at these wavelengths. Accurate identification of CHs in EUV, however, can be difficult due to a variety of factors, including stray light from nearby regions, limb brightening, and the presence of filaments (which also appear dark, but are not sources of solar wind). In order to overcome these issues, this work incorporates photospheric magnetic-field data into a classical EUV-based segmentation algorithm based on the Active Contours Without Edges (ACWE) segmentation method. In this work magnetic-field data are incorporated directly into the segmentation process, serving both as a method for removing non-CH regions in advance, and as a method to constrain evolution of the segmented CH boundary. This reduces the presence of filaments while allowing the segmentation to include CH regions that may be difficult to identify due to inconsistent intensities.
- 8 September 2025
- Published by Springer Nature in Solar Physics
- Vol. 300 (9) , 1-31
Open AccessIncorporating Magnetic-Field Characteristics into EUV-Based Automated Segmentation of Coronal Holes
Coronal holes (CHs) are magnetically open regions that allow hot coronal plasma to escape from the Sun and form the high-speed solar wind. This wind can interact with Earth’s magnetic field. For this reason, developing an accurate understanding of CH regions is vital for understanding space weather and its effects on Earth. The process of identifying CH regions typically relies on extreme ultraviolet (EUV) imagery, leveraging the fact that CHs appear dark at these wavelengths. Accurate identification of CHs in EUV, however, can be difficult due to a variety of factors, including stray light from nearby regions, limb brightening, and the presence of filaments (which also appear dark, but are not sources of solar wind). In order to overcome these issues, this work incorporates photospheric magnetic-field data into a classical EUV-based segmentation algorithm based on the Active Contours Without Edges (ACWE) segmentation method. In this work magnetic-field data are incorporated directly into the segmentation process, serving both as a method for removing non-CH regions in advance, and as a method to constrain evolution of the segmented CH boundary. This reduces the presence of filaments while allowing the segmentation to include CH regions that may be difficult to identify due to inconsistent intensities.
- Open Access
- 31 January 2025
- Published by Springer Nature in Solar Physics
- Vol. 300 (1) , 1-21
Magnetic Field-Constrained Ensemble Image Segmentation of Coronal Holes in Chromospheric Observations
Coronal holes (CHs) are large-scale, low-density regions in the solar atmosphere that may expel high-speed solar wind streams that incite hazardous, geomagnetic storms. Coronal and solar wind models can predict these high-speed streams, and the performance of the coronal model can be validated against segmented CH boundaries. We present a novel method named Sub-Transition Region Identification of Ensemble Coronal Holes (STRIDE-CH) to address prominent challenges in segmenting CHs using extreme-ultraviolet (EUV) imagery. Ground-based, chromospheric He i 10,830 Å line imagery and underlying Fe i photospheric magnetograms are revisited to disambiguate CHs from filaments and quiet Sun, overcome obscuration by coronal loops, and complement established methods in the community which use space-borne coronal EUV observations. Classical computer vision techniques are applied to constrain the radiative and magnetic properties of detected CHs, produce an ensemble of boundaries, and compile these boundaries in a confidence map that quantifies the likelihood of the CH presence throughout the solar disk. This method is a science-enabling one towards future studies of CH formation and variability from a mid-atmospheric perspective.
- 31 January 2025
- Published by Springer Nature in Solar Physics
- Vol. 300 (1) , 1-21
Open AccessMagnetic Field-Constrained Ensemble Image Segmentation of Coronal Holes in Chromospheric Observations
Coronal holes (CHs) are large-scale, low-density regions in the solar atmosphere that may expel high-speed solar wind streams that incite hazardous, geomagnetic storms. Coronal and solar wind models can predict these high-speed streams, and the performance of the coronal model can be validated against segmented CH boundaries. We present a novel method named Sub-Transition Region Identification of Ensemble Coronal Holes (STRIDE-CH) to address prominent challenges in segmenting CHs using extreme-ultraviolet (EUV) imagery. Ground-based, chromospheric He i 10,830 Å line imagery and underlying Fe i photospheric magnetograms are revisited to disambiguate CHs from filaments and quiet Sun, overcome obscuration by coronal loops, and complement established methods in the community which use space-borne coronal EUV observations. Classical computer vision techniques are applied to constrain the radiative and magnetic properties of detected CHs, produce an ensemble of boundaries, and compile these boundaries in a confidence map that quantifies the likelihood of the CH presence throughout the solar disk. This method is a science-enabling one towards future studies of CH formation and variability from a mid-atmospheric perspective.
- 4 June 2024
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Aerospace and Electronic Systems
- Vol. 60 (5) , 6685-6701
Neural-Based Video Compression on Solar Dynamics Observatory Images
NASA's Solar Dynamics Observatory (SDO) mission collects extensive data to monitor the Sun's daily activity. In the realm of space mission design, data compression plays a crucial role in addressing the challenges posed by limited telemetry rates. The primary objective of data compression is to facilitate efficient data management and transmission to work within the constrained bandwidth, thereby ensuring that essential information is captured while optimizing the utilization of available resources. This paper introduces a neural video compression technique that achieves a high compression ratio for the SDO's image data collection. The proposed approach focuses on leveraging both temporal and spatial redundancies in the data, leading to a more efficient compression. In this work, we introduce an architecture based on the Transformer model, which is specifically designed to capture both local and global information from input images in an effective and efficient manner. Additionally, our network is equipped with an entropy model that can accurately model the probability distribution of the latent representations and improves the speed of the entropy decoding step. The entropy model leverages a channel-dependent approach and utilizes checkerboard-shaped local and global spatial contexts. By combining the Transformer-based video compression network with our entropy model, the proposed compression algorithm demonstrates superior performance over traditional video codecs like H.264 and H.265, as confirmed by our experimental results.
- 4 June 2024
- Published by Institute of Electrical and Electronics Engineers (IEEE) in IEEE Transactions on Aerospace and Electronic Systems
- Vol. 60 (5) , 6685-6701
Neural-Based Video Compression on Solar Dynamics Observatory Images
NASA's Solar Dynamics Observatory (SDO) mission collects extensive data to monitor the Sun's daily activity. In the realm of space mission design, data compression plays a crucial role in addressing the challenges posed by limited telemetry rates. The primary objective of data compression is to facilitate efficient data management and transmission to work within the constrained bandwidth, thereby ensuring that essential information is captured while optimizing the utilization of available resources. This paper introduces a neural video compression technique that achieves a high compression ratio for the SDO's image data collection. The proposed approach focuses on leveraging both temporal and spatial redundancies in the data, leading to a more efficient compression. In this work, we introduce an architecture based on the Transformer model, which is specifically designed to capture both local and global information from input images in an effective and efficient manner. Additionally, our network is equipped with an entropy model that can accurately model the probability distribution of the latent representations and improves the speed of the entropy decoding step. The entropy model leverages a channel-dependent approach and utilizes checkerboard-shaped local and global spatial contexts. By combining the Transformer-based video compression network with our entropy model, the proposed compression algorithm demonstrates superior performance over traditional video codecs like H.264 and H.265, as confirmed by our experimental results.
- Open Access
- 13 February 2024
- Published by American Astronomical Society in The Astrophysical Journal Supplement Series
- Vol. 271 (1)
A Community Data Set for Comparing Automated Coronal Hole Detection Schemes
Automated detection schemes are nowadays the standard approach for locating coronal holes in extreme-UV images from the Solar Dynamics Observatory (SDO). However, factors such as the noisy nature of solar imagery, instrumental effects, and others make it challenging to identify coronal holes using these automated schemes. While discrepancies between detection schemes have been noted in the literature, a comprehensive assessment of these discrepancies is still lacking. The contribution of the Coronal Hole Boundary Working Team in the COSPAR ISWAT initiative to close this gap is threefold. First, we present the first community data set for comparing automated coronal hole detection schemes. This data set consists of 29 SDO images, all of which were selected by experienced observers to challenge automated schemes. Second, we use this community data set as input to 14 widely applied automated schemes to study coronal holes and collect their detection results. Third, we study three SDO images from the data set that exemplify the most important lessons learned from this effort. Our findings show that the choice of the automated detection scheme can have a significant effect on the physical properties of coronal holes, and we discuss the implications of these findings for open questions in solar and heliospheric physics. We envision that this community data set will serve the scientific community as a benchmark data set for future developments in the field.
- 13 February 2024
- Published by American Astronomical Society in The Astrophysical Journal Supplement Series
- Vol. 271 (1)
Open AccessA Community Data Set for Comparing Automated Coronal Hole Detection Schemes
Automated detection schemes are nowadays the standard approach for locating coronal holes in extreme-UV images from the Solar Dynamics Observatory (SDO). However, factors such as the noisy nature of solar imagery, instrumental effects, and others make it challenging to identify coronal holes using these automated schemes. While discrepancies between detection schemes have been noted in the literature, a comprehensive assessment of these discrepancies is still lacking. The contribution of the Coronal Hole Boundary Working Team in the COSPAR ISWAT initiative to close this gap is threefold. First, we present the first community data set for comparing automated coronal hole detection schemes. This data set consists of 29 SDO images, all of which were selected by experienced observers to challenge automated schemes. Second, we use this community data set as input to 14 widely applied automated schemes to study coronal holes and collect their detection results. Third, we study three SDO images from the data set that exemplify the most important lessons learned from this effort. Our findings show that the choice of the automated detection scheme can have a significant effect on the physical properties of coronal holes, and we discuss the implications of these findings for open questions in solar and heliospheric physics. We envision that this community data set will serve the scientific community as a benchmark data set for future developments in the field.
- Open Access
- 20 November 2023
- Published by Springer Nature in Solar Physics
- Vol. 298 (11) , 1-38
Quantifying the Consistency and Characterizing the Confidence of Coronal Holes Detected by Active Contours Without Edges (ACWE)
Coronal Holes (CHs) are regions of open magnetic-field lines, resulting in high-speed solar wind. Accurate detection of CHs is vital for space-weather prediction. This paper presents an intramethod ensemble for coronal-hole detection based on the Active Contours Without Edges (ACWE) segmentation algorithm. The purpose of this ensemble is to develop a confidence map that defines, for all ondisk regions of a solar extreme ultraviolet (EUV) image, the likelihood that each region belongs to a CH based on that region’s proximity to, and homogeneity with, the core of identified CH regions. By relying on region homogeneity, and not intensity (which can vary due to various factors, including line-of-sight changes and stray light from nearby bright regions), to define the final confidence of any given region, this ensemble is able to provide robust, consistent delineations of the CH regions. Using the metrics of global consistency error (GCE), local consistency error (LCE), intersection over union (IOU), and the structural similarity index measure (SSIM), the method is shown to be robust to different spatial resolutions maintaining a median IOU $>0.75$ > 0.75 and minimum SSIM $>0.93$ > 0.93 even when the segmentation process was performed on an EUV image decimated from $4096\times 4096$ 4096 × 4096 pixels down to $512\times 512$ 512 × 512 pixels. Furthermore, using the same metrics, the method is shown to be robust across short timescales, producing segmentation with a mean IOU of 0.826 from EUV images taken at a 1-h cadence, and showing a smooth decay in similarity across all metrics as a function of time, indicating self-consistent segmentations even when corrections for exposure time have not been applied to the data. Finally, the accuracy of the segmentations and confidence maps are validated by considering the skewness (i.e., unipolarity) of the underlying magnetic field.
- 20 November 2023
- Published by Springer Nature in Solar Physics
- Vol. 298 (11) , 1-38
Open AccessQuantifying the Consistency and Characterizing the Confidence of Coronal Holes Detected by Active Contours Without Edges (ACWE)
Coronal Holes (CHs) are regions of open magnetic-field lines, resulting in high-speed solar wind. Accurate detection of CHs is vital for space-weather prediction. This paper presents an intramethod ensemble for coronal-hole detection based on the Active Contours Without Edges (ACWE) segmentation algorithm. The purpose of this ensemble is to develop a confidence map that defines, for all ondisk regions of a solar extreme ultraviolet (EUV) image, the likelihood that each region belongs to a CH based on that region’s proximity to, and homogeneity with, the core of identified CH regions. By relying on region homogeneity, and not intensity (which can vary due to various factors, including line-of-sight changes and stray light from nearby bright regions), to define the final confidence of any given region, this ensemble is able to provide robust, consistent delineations of the CH regions. Using the metrics of global consistency error (GCE), local consistency error (LCE), intersection over union (IOU), and the structural similarity index measure (SSIM), the method is shown to be robust to different spatial resolutions maintaining a median IOU $>0.75$ > 0.75 and minimum SSIM $>0.93$ > 0.93 even when the segmentation process was performed on an EUV image decimated from $4096\times 4096$ 4096 × 4096 pixels down to $512\times 512$ 512 × 512 pixels. Furthermore, using the same metrics, the method is shown to be robust across short timescales, producing segmentation with a mean IOU of 0.826 from EUV images taken at a 1-h cadence, and showing a smooth decay in similarity across all metrics as a function of time, indicating self-consistent segmentations even when corrections for exposure time have not been applied to the data. Finally, the accuracy of the segmentations and confidence maps are validated by considering the skewness (i.e., unipolarity) of the underlying magnetic field.
- Open Access
Neural-based Compression Scheme for Solar Image Data
Studying the solar system and especially the Sun relies on the data gathered daily from space missions. These missions are data-intensive and compressing this data to make them efficiently transferable to the ground station is a twofold decision to make. Stronger compression methods, by distorting the data, can increase data throughput at the cost of accuracy which could affect scientific analysis of the data. On the other hand, preserving subtle details in the compressed data requires a high amount of data to be transferred, reducing the desired gains from compression. In this work, we propose a neural network-based lossy compression method to be used in NASA's data-intensive imagery missions. We chose NASA's SDO mission which transmits 1.4 terabytes of data each day as a proof of concept for the proposed algorithm. In this work, we propose an adversarially trained neural network, equipped with local and non-local attention modules to capture both the local and global structure of the image resulting in a better trade-off in rate-distortion (RD) compared to conventional hand-engineered codecs. The RD variational autoencoder used in this work is jointly trained with a channel-dependent entropy model as a shared prior between the analysis and synthesis transforms to make the entropy coding of the latent code more effective. Our neural image compression algorithm outperforms currently-in-use and state-of-the-art codecs such as JPEG and JPEG-2000 in terms of the RD performance when compressing extreme-ultraviolet (EUV) data. As a proof of concept for use of this algorithm in SDO data analysis, we have performed coronal hole (CH) detection using our compressed images, and generated consistent segmentations, even at a compression rate of $\sim0.1$ bits per pixel (compared to 8 bits per pixel on the original data) using EUV data from SDO.Open AccessNeural-based Compression Scheme for Solar Image Data
Studying the solar system and especially the Sun relies on the data gathered daily from space missions. These missions are data-intensive and compressing this data to make them efficiently transferable to the ground station is a twofold decision to make. Stronger compression methods, by distorting the data, can increase data throughput at the cost of accuracy which could affect scientific analysis of the data. On the other hand, preserving subtle details in the compressed data requires a high amount of data to be transferred, reducing the desired gains from compression. In this work, we propose a neural network-based lossy compression method to be used in NASA's data-intensive imagery missions. We chose NASA's SDO mission which transmits 1.4 terabytes of data each day as a proof of concept for the proposed algorithm. In this work, we propose an adversarially trained neural network, equipped with local and non-local attention modules to capture both the local and global structure of the image resulting in a better trade-off in rate-distortion (RD) compared to conventional hand-engineered codecs. The RD variational autoencoder used in this work is jointly trained with a channel-dependent entropy model as a shared prior between the analysis and synthesis transforms to make the entropy coding of the latent code more effective. Our neural image compression algorithm outperforms currently-in-use and state-of-the-art codecs such as JPEG and JPEG-2000 in terms of the RD performance when compressing extreme-ultraviolet (EUV) data. As a proof of concept for use of this algorithm in SDO data analysis, we have performed coronal hole (CH) detection using our compressed images, and generated consistent segmentations, even at a compression rate of $\sim0.1$ bits per pixel (compared to 8 bits per pixel on the original data) using EUV data from SDO.