Erol Erçağ
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Previous Organizations / Institutes
The organizations / institutes from the scholar's other articles in the past ten years
Erol Erçağ has a total of 49 co-authors. Here are the top co-authors by number of shared publications:
- Veyis Karakoç
Department of Chemistry, Faculty of Science, Çankırı Karatekin University, Çankırı, Türkiye
4 shared publications - Deniz Ceyhan
Department of Chemistry, Science and Letters Faculty, Tekirdag Namik Kemal University, Tekirdag, Turkey
2 shared publications - Haluk Çetinok
Department of Molecular Biology and Genetics, Faculty of Science, Koç University, Istanbul, Türkiye
2 shared publications - Hasan DeMirci
Department of Molecular Biology and Genetics, Koc University, Istanbul 34450, Turkiye
2 shared publications - Jülide Hızal
Chemical Engineering Department, Engineering Faculty, Yalova University, Yalova, Turkey
2 shared publications - Yusuf Melih Şekerer
Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Biruni University, Istanbul, Türkiye
2 shared publications
Latest Publications
- Open Access
- 25 December 2025
- Published by The Scientific and Technological Research Council of Turkey (TUBITAK-ULAKBIM) - DIGITAL COMMONS JOURNALS in TURKISH JOURNAL OF CHEMISTRY
- Vol. 49 (6) , 764-779
Structural categorization and identification of electrostatic interactions in two proposed human serum albumin dimerization patterns and dipyridamole interaction
Human serum albumin (HSA) is a ubiquitous, multifunctional protein responsible for the systemic distribution of both endogenous metabolites and exogenous pharmaceuticals. Its inherent properties, particularly its ability to seep into tissues and its multiple ligand-binding sites, have rendered HSA an attractive vehicle for nanoparticle-based drug delivery systems, particularly for cancer targeting. In this study, we present high-resolution crystallographic data revealing two distinct dimerization patterns of HSA (Protein Data Bank [PDB] ID: 9V61) obtained under high-concentration crystallization conditions, along with results from dipyridamole docking. Both dimer types demonstrate extensive interface areas and a significant number of electrostatic interactions. Comparative analysis with a previously reported dimer structure (PDB ID: 3JQZ) and other high-interface-area structures (PDB ID: 5Z0B, PDB ID: 8CKS) indicates similarities in contact regions but unique residue-level differences in bonding interactions. Interface surface area distribution and space group histograms further support the rarity and potential physiological relevance of the identified dimer forms. Importantly, these dimer configurations do not disrupt Sudlow’s drug-binding sites, as the dipyridamole docking analysis shows strong affinity for sites I and III without affecting their utility in engineered drug delivery. Our findings open new avenues for structure-based mutagenesis and nanoparticle design strategies centered on HSA dimerization dynamics.
- 25 December 2025
- Published by The Scientific and Technological Research Council of Turkey (TUBITAK-ULAKBIM) - DIGITAL COMMONS JOURNALS in TURKISH JOURNAL OF CHEMISTRY
- Vol. 49 (6) , 764-779
Open AccessStructural categorization and identification of electrostatic interactions in two proposed human serum albumin dimerization patterns and dipyridamole interaction
Human serum albumin (HSA) is a ubiquitous, multifunctional protein responsible for the systemic distribution of both endogenous metabolites and exogenous pharmaceuticals. Its inherent properties, particularly its ability to seep into tissues and its multiple ligand-binding sites, have rendered HSA an attractive vehicle for nanoparticle-based drug delivery systems, particularly for cancer targeting. In this study, we present high-resolution crystallographic data revealing two distinct dimerization patterns of HSA (Protein Data Bank [PDB] ID: 9V61) obtained under high-concentration crystallization conditions, along with results from dipyridamole docking. Both dimer types demonstrate extensive interface areas and a significant number of electrostatic interactions. Comparative analysis with a previously reported dimer structure (PDB ID: 3JQZ) and other high-interface-area structures (PDB ID: 5Z0B, PDB ID: 8CKS) indicates similarities in contact regions but unique residue-level differences in bonding interactions. Interface surface area distribution and space group histograms further support the rarity and potential physiological relevance of the identified dimer forms. Importantly, these dimer configurations do not disrupt Sudlow’s drug-binding sites, as the dipyridamole docking analysis shows strong affinity for sites I and III without affecting their utility in engineered drug delivery. Our findings open new avenues for structure-based mutagenesis and nanoparticle design strategies centered on HSA dimerization dynamics.
- 7 June 2025
- Published by Elsevier in Journal of Molecular Structure
- Vol. 1344
SPR and molecular modelling study of dipyridamole with bovine serum albumin (BSA) interaction
- 7 June 2025
- Published by Elsevier in Journal of Molecular Structure
- Vol. 1344
SPR and molecular modelling study of dipyridamole with bovine serum albumin (BSA) interaction
- Open Access
Structural Categorization and identification of electrostatic interactions in two proposed Human Serum Albumin dimerization patterns and dipyridamole interaction
Human serum albumin (HSA) is a ubiquitous, multifunctional protein responsible for the systemic distribution of both endogenous metabolites and exogenous pharmaceuticals. Its inherent properties, mainly its ability to seep into the tissues and multiple ligand-binding sites, have rendered HSA an attractive vehicle in nanoparticle-based drug delivery systems, particularly in cancer targeting. In this study, we present high-resolution crystallographic data revealing two distinct dimerization patterns of HSA (PDB ID: 9V61), obtained under high-concentration crystallization conditions, in addition to results from dipyridamole dockings. Both dimer types demonstrate extensive interface areas and a significant number of electrostatic interactions. Comparative analysis with previously reported dimer structure (PDB ID: 3JQZ) and other high-interface-area structures, (PDB ID: 5Z0B, PDB ID: 8CKS) indicates similarities in contact regions, but unique residue-level differences in bonding interactions. Interface surface area distribution and space group histograms further support the rarity and potential physiological relevance of the identified dimer forms. Importantly, these dimer configurations do not disrupt Sudlow’s drug-binding sites, which is important as the dipyridamole docking analysis presents strong affinity to Sudlow site I and Sudlow site III, not affecting their utility in engineered drug delivery. Our findings open new avenues for structure-based mutagenesis and nanoparticle design strategies centered on HSA dimerization dynamics.
Open AccessStructural Categorization and identification of electrostatic interactions in two proposed Human Serum Albumin dimerization patterns and dipyridamole interaction
Human serum albumin (HSA) is a ubiquitous, multifunctional protein responsible for the systemic distribution of both endogenous metabolites and exogenous pharmaceuticals. Its inherent properties, mainly its ability to seep into the tissues and multiple ligand-binding sites, have rendered HSA an attractive vehicle in nanoparticle-based drug delivery systems, particularly in cancer targeting. In this study, we present high-resolution crystallographic data revealing two distinct dimerization patterns of HSA (PDB ID: 9V61), obtained under high-concentration crystallization conditions, in addition to results from dipyridamole dockings. Both dimer types demonstrate extensive interface areas and a significant number of electrostatic interactions. Comparative analysis with previously reported dimer structure (PDB ID: 3JQZ) and other high-interface-area structures, (PDB ID: 5Z0B, PDB ID: 8CKS) indicates similarities in contact regions, but unique residue-level differences in bonding interactions. Interface surface area distribution and space group histograms further support the rarity and potential physiological relevance of the identified dimer forms. Importantly, these dimer configurations do not disrupt Sudlow’s drug-binding sites, which is important as the dipyridamole docking analysis presents strong affinity to Sudlow site I and Sudlow site III, not affecting their utility in engineered drug delivery. Our findings open new avenues for structure-based mutagenesis and nanoparticle design strategies centered on HSA dimerization dynamics.
- 3 January 2025
- Published by Etlik Veteriner Mikrobiyoloji Dergisi in Etlik Veteriner Mikrobiyoloji Dergisi
- Vol. 35 (2) , 148-158
The Effect of Dietary Sanguinaria canadensis Extract and/or Mannan-Oligosaccharide Supplementation on Body Weight and Serum Total Antioxidant Activity in Broilers Under Heat Stress
Sanguinaria canadensis L. is an herbalceous perennial that contains benzophenanthridine alkaloids, including sanguinarine and dihydrosanguinarine. Mannan-oligosaccharide (MOS) is derived from the cell wall of the yeast Saccharomyces cerevisiae. The aim of the study was to investigate the effects of the supplementation of Sanguinaria canadensis extract (SCE) and/or MOS on body weight and serum total antioxidant activity in broilers under heat stress (HS[+]) and normal (HS[-]) conditions. A total of 72 one-day-old Ross 308 broiler were randomly assigned to 8 pens in two environmentally controlled rooms (4 pens per room). The dietary treatments were: (1) basal diet (control), (2) basal diet plus 1 g/kg of SCE, (3) basal diet plus 1 g/kg of MOS, (4) basal diet plus 1 g/kg of SCE and 1 g/kg of MOS. At 15 days of age, the chickens in one of the two rooms were exposed to HS (34±2°C) for 6 h, while the chickens in another room were continuously kept under normal conditions, serving as control treatment (22±2°C). During the study, body weights were significantly different and these differences were depended on diet and heat. HS[+] groups had lower body weights, however, the supplementation of SCE and MOS improved this situation positively. During the study, it was also determined that there was an interaction between diet and heat. Differences for serum antioxidant activity between HS[-] and HS[+] groups were significant for CUPRAC analysis results and unsignificant for ABTS analysis results.
- 3 January 2025
- Published by Etlik Veteriner Mikrobiyoloji Dergisi in Etlik Veteriner Mikrobiyoloji Dergisi
- Vol. 35 (2) , 148-158
The Effect of Dietary Sanguinaria canadensis Extract and/or Mannan-Oligosaccharide Supplementation on Body Weight and Serum Total Antioxidant Activity in Broilers Under Heat Stress
Sanguinaria canadensis L. is an herbalceous perennial that contains benzophenanthridine alkaloids, including sanguinarine and dihydrosanguinarine. Mannan-oligosaccharide (MOS) is derived from the cell wall of the yeast Saccharomyces cerevisiae. The aim of the study was to investigate the effects of the supplementation of Sanguinaria canadensis extract (SCE) and/or MOS on body weight and serum total antioxidant activity in broilers under heat stress (HS[+]) and normal (HS[-]) conditions. A total of 72 one-day-old Ross 308 broiler were randomly assigned to 8 pens in two environmentally controlled rooms (4 pens per room). The dietary treatments were: (1) basal diet (control), (2) basal diet plus 1 g/kg of SCE, (3) basal diet plus 1 g/kg of MOS, (4) basal diet plus 1 g/kg of SCE and 1 g/kg of MOS. At 15 days of age, the chickens in one of the two rooms were exposed to HS (34±2°C) for 6 h, while the chickens in another room were continuously kept under normal conditions, serving as control treatment (22±2°C). During the study, body weights were significantly different and these differences were depended on diet and heat. HS[+] groups had lower body weights, however, the supplementation of SCE and MOS improved this situation positively. During the study, it was also determined that there was an interaction between diet and heat. Differences for serum antioxidant activity between HS[-] and HS[+] groups were significant for CUPRAC analysis results and unsignificant for ABTS analysis results.
- Open Access
- 1 January 2025
- Published by Journal of Innovative Engineering and Natural Science in Journal of Innovative Engineering and Natural Science
- Vol. 5 (1) , 176-186
Determination of insecticides in honey samples collected from Gümüşhane-Turkiye; Box-Behnken design evaluation of experimental parameters
This study deals with the investigation of cyfluthrin, cypermethrin, deltamethrin, and malathion residues in local honey samples from Gümüşhane, Turkey. The determination was performed with GC/MS-MS method with HP-5MS column under certain conditions: 120 ℃ oven temperature, 250 ℃ injection temperature, 121.9 kPa pressure and 1.2-1.8 mL/min flow rates. The samples were picked from eighteen stations of Gümüşhane. Standard addition method was employed in chromatographic determination. No pesticide detected in samples of fifteen stations, nevertheless, subjected pesticides were determined in samples collected from other three stations. The residue levels varied from 0.18 mg/kg to 9.50 mg/kg at 1.5 mL/min flow rate. The results were also evaluated with Box-Behnken Design (BBD) optimization. Multivariate experimental design (flow rate and station, pesticide type) was employed for constructing quadratic models. Regression analysis showed that the experimental results and the predictive values yielded by model are quite close to each other with determination coefficient (R2) of 0.985.
- 1 January 2025
- Published by Journal of Innovative Engineering and Natural Science in Journal of Innovative Engineering and Natural Science
- Vol. 5 (1) , 176-186
Open AccessDetermination of insecticides in honey samples collected from Gümüşhane-Turkiye; Box-Behnken design evaluation of experimental parameters
This study deals with the investigation of cyfluthrin, cypermethrin, deltamethrin, and malathion residues in local honey samples from Gümüşhane, Turkey. The determination was performed with GC/MS-MS method with HP-5MS column under certain conditions: 120 ℃ oven temperature, 250 ℃ injection temperature, 121.9 kPa pressure and 1.2-1.8 mL/min flow rates. The samples were picked from eighteen stations of Gümüşhane. Standard addition method was employed in chromatographic determination. No pesticide detected in samples of fifteen stations, nevertheless, subjected pesticides were determined in samples collected from other three stations. The residue levels varied from 0.18 mg/kg to 9.50 mg/kg at 1.5 mL/min flow rate. The results were also evaluated with Box-Behnken Design (BBD) optimization. Multivariate experimental design (flow rate and station, pesticide type) was employed for constructing quadratic models. Regression analysis showed that the experimental results and the predictive values yielded by model are quite close to each other with determination coefficient (R2) of 0.985.
- Open Access
- 15 May 2024
- Published by The Turkish Chemical Society in Journal of the Turkish Chemical Society Section A: Chemistry
- Vol. 11 (2) , 845-868
New Generation Nanoadsorbents and Conventional Techniques for Arsenic Removal from Waters
Nowadays, with excessive use due to rapid population growth, growing industry, and technological developments, environmental pollution is also increasing and is reaching a point where it threatens the health of humans. The alarming increase in environmental pollution is mostly seen in the form of water pollution. Water pollution has reached levels that threaten human health. There are difficulties in accessing clean water in many parts of the world as a result of restricting the use of natural water resources polluted by both human activities and natural causes. Therefore, intense efforts are made to remove especially heavy metals and other harmful substances that pollute water. Among these toxic heavy metals threatening the health of humans, arsenic is at the top of the list as the most dangerous one. In recent years, many methods and techniques have been developed in addition to classical methods for removing pollutants from water. In this study, conventional methods used in the treatment of arsenic-contaminated waters, the difficulties encountered in the removal process, and the advantages and disadvantages of the methods were critically reviewed in the light of current and past information. In addition, detailed comparative information is given about nano-sized adsorbents, which is an innovative approach used in the adsorption method, one of the arsenic removal methods.
- 15 May 2024
- Published by The Turkish Chemical Society in Journal of the Turkish Chemical Society Section A: Chemistry
- Vol. 11 (2) , 845-868
Open AccessNew Generation Nanoadsorbents and Conventional Techniques for Arsenic Removal from Waters
Nowadays, with excessive use due to rapid population growth, growing industry, and technological developments, environmental pollution is also increasing and is reaching a point where it threatens the health of humans. The alarming increase in environmental pollution is mostly seen in the form of water pollution. Water pollution has reached levels that threaten human health. There are difficulties in accessing clean water in many parts of the world as a result of restricting the use of natural water resources polluted by both human activities and natural causes. Therefore, intense efforts are made to remove especially heavy metals and other harmful substances that pollute water. Among these toxic heavy metals threatening the health of humans, arsenic is at the top of the list as the most dangerous one. In recent years, many methods and techniques have been developed in addition to classical methods for removing pollutants from water. In this study, conventional methods used in the treatment of arsenic-contaminated waters, the difficulties encountered in the removal process, and the advantages and disadvantages of the methods were critically reviewed in the light of current and past information. In addition, detailed comparative information is given about nano-sized adsorbents, which is an innovative approach used in the adsorption method, one of the arsenic removal methods.