Dellena Evelyn Bloom

Quick and cost‐effective soil measurements are imperative to improve soil monitoring efforts, with low‐cost handheld near‐infrared soil spectroscopy scanners offering a solution. Yet, scans taken under field‐moist conditions struggle to accurately predict properties of interest due to wetness‐induced noise, with existing methods, such as external parameter orthogonalization, relying on drying curves that are difficult to establish. Both the growth of computationally expensive soil spectroscopy modeling methods and the expansion of monitoring efforts call for the development of a preprocessing method to largely reduce signal size. We explore a preprocessing approach using discrete multi‐resolution wavelets to enhance signals for predicting organic carbon, pH, and clay content using chemometric modeling under variable moisture and compression levels. Discrete Haar wavelet transformation retained the predictive power of the untransformed scan while improving computational efficiency by reducing the signal size. However, median performance for models calibrated on dry samples and predicting clay content on wet samples showed small improvements, with Lin's concordance correlation coefficient (CCC) increasing by 11% at high compression (confidence interval [CI]: [0.25, 0.61] to [0.33, 0.63]). Minor increases in median performance were also shown for high‐compression Haar in models calibrated on wet samples and used to predict properties from wet samples; organic carbon Lin's CCC increased by 30% ([0.20, 0.70] to [0.33, 0.76]) and pH Lin's CCC increased by 17% ([0.17, 0.69] to [0.06, 0.74]). Haar wavelet compression reduced signal size significantly without sacrificing predictive power. Memory‐based learning or other advanced machine learning applications would benefit from the signal compression of Haar wavelet preprocessing.

Decomposition is the transformation of dead organic matter into its inorganic constituents. In most biomes, decomposition rates can be accurately predicted with simple mathematical models, but these models have long under‐predicted decomposition in globally extensive drylands. We posit that the exposed surface conditions characteristic of drylands make litter decomposition uniquely subject to microsite‐specific environmental controls and spatially variable microbial communities. As such, decomposition in dryland ecosystems—which are characterized by extremes in temporal heterogeneity of climate conditions and spatial heterogeneity of vegetation cover with corresponding microclimate variability—is a prime example of a macrosystems process that can be addressed by merging field data with new predictive process models operating across a hierarchical continuum of spatial scales and process resolutions. A macrosystems approach offers promise to reconcile model‐measurement discrepancies by integrating observations and experiments across multiple scales, from microsites (e.g. shrub sub‐canopy or intercanopy) to regions (e.g. across a 100s of km² study site with complex topography, precipitation and temperature) and ultimately to a continental perspective (e.g. North American drylands). Recent developments in technology and data availability position the scientific community to integrate laboratory, field, modelling and remote sensing approaches across a hierarchical range of scales to capture the spatiotemporal distribution of litter and environmental conditions needed to predict decay dynamics at the micro‐to‐macroscale. This multi‐scale approach promises a path forward to resolving a longstanding disconnect between measured data and modelled processes in dryland litter decomposition. Dryland litter decomposition presents an excellent case study for resolving spatially and temporally complex biogeochemical dynamics through a hierarchical, multidisciplinary macrosystems approach. We focus on dryland litter decomposition, but the hierarchical, multidisciplinary macrosystems approach we outline shows great potential for resolving other spatially and temporally complex biogeochemical processes across a wide range of ecosystems. Read the free Plain Language Summary for this article on the Journal blog.

Soil spectroscopy is a widely used method for estimating soil properties that are important to environmental and agricultural monitoring. However, a bottleneck to its more widespread adoption is the need for establishing large reference datasets for training machine learning (ML) models, which are called soil spectral libraries (SSLs). Similarly, the prediction capacity of new samples is also subject to the number and diversity of soil types and conditions represented in the SSLs. To help bridge this gap and enable hundreds of stakeholders to collect more affordable soil data by leveraging a centralized open resource, the Soil Spectroscopy for Global Good initiative has created the Open Soil Spectral Library (OSSL). In this paper, we describe the procedures for collecting and harmonizing several SSLs that are incorporated into the OSSL, followed by exploratory analysis and predictive modeling. The results of 10-fold cross-validation with refitting show that, in general, mid-infrared (MIR)-based models are significantly more accurate than visible and near-infrared (VisNIR) or near-infrared (NIR) models. From independent model evaluation, we found that Cubist comes out as the best-performing ML algorithm for the calibration and delivery of reliable outputs (prediction uncertainty and representation flag). Although many soil properties are well predicted, total sulfur, extractable sodium, and electrical conductivity performed poorly in all spectral regions, with some other extractable nutrients and physical soil properties also performing poorly in one or two spectral regions (VisNIR or NIR). Hence, the use of predictive models based solely on spectral variations has limitations. This study also presents and discusses several other open resources that were developed from the OSSL, aspects of opening data, current limitations, and future development. With this genuinely open science project, we hope that OSSL becomes a driver of the soil spectroscopy community to accelerate the pace of scientific discovery and innovation.

Soil spectroscopy is a widely used method for estimating soil properties that are important to environmental and agricultural monitoring. However, a bottleneck to its more widespread adoption is the need for establishing large reference datasets for training machine learning (ML) models, which are called soil spectral libraries (SSLs). Similarly, the prediction capacity of new samples is also subject to the number and diversity of soil types and conditions represented in the SSLs. To help bridge this gap and enable hundreds of stakeholders to collect more affordable soil data by leveraging a centralized open resource, the Soil Spectroscopy for Global Good has created the Open Soil Spectral Library (OSSL). In this paper, we describe the procedures for collecting and harmonizing several SSLs that are incorporated into the OSSL, followed by exploratory analysis and predictive modeling. The results of 10-fold cross-validation with refitting show that, in general, mid-infrared (MIR)-based models are significantly more accurate than visible and near-infrared (VisNIR) or near-infrared (NIR) models. From independent model evaluation, we found that Cubist comes out as the best-performing ML algorithm for the calibration and delivery of reliable outputs (prediction uncertainty and representation flag). Although many soil properties are well predicted, total sulfur, extractable sodium, and electrical conductivity performed poorly in all spectral regions, with some other extractable nutrients and physical soil properties also performing poorly in one or two spectral regions (VisNIR or Neospectra NIR). Hence, the use of predictive models based solely on spectral variations has limitations. This study also presents and discusses several other open resources that were developed from the OSSL, aspects of opening data, current limitations, and future development. With this genuinely open science project, we hope that OSSL becomes the driver of the soil spectroscopy community to accelerate the pace of scientific discovery and innovation.

As tropical forests cycle the most water and carbon, it is crucial to understand the short- and long-term effects of intensifying cyclones on these ecosystems. Soil nutrient status has been shown to moderate forest cyclone responses using field litterfall measurements, but litterfall is one of the multiple cyclone impact metrtics, which may or may not be correlated with one another or with site nutrients. We used remotely sensed vegetation indices to quantify immediate damage and two-year recovery for 42 cases across nine tropical forests in Hawaii, Puerto Rico, Mexico, Australia, and Taiwan affected by 12 cyclones between 2004 and 2017. We tested whether changes in leaf area index (LAI) and enhanced vegetation index (EVI) correlated with changes in litterfall observations and how changes varied with total soil phosphorus (P) concentrations across regions. We compared cyclone-induced changes and recovery of LAI and EVI to litterfall observations compiled in a pantropical meta-analysis. We found large variation in changes in LAI and EVI across forests, with the greatest reductions in LAI (−77%) and EVI (−77%) in Mexico (Jalisco) and Puerto Rico, respectively. LAI (r= −0.52) and EVI (r= −0.60) changes correlated with those in litterfall across cases. Post-cyclone data showed recovery of LAI by four months, EVI by two months, and litterfall by ten months. We detected larger changes in LAI and EVI in forests with higher soil P, but these relationships were not significant when accounting for cyclone and site as random effects. Principal component analyses indicated a regional clustering of cases related to their contrasting cyclone regimes, with the frequency and intensity of cyclone events negatively correlated. Overall, remote sensing observations complement but do not substitute for ground observations that reveal cyclone damage and post-cyclone recovery in tropical forests, and soil phosphorus moderates some but not all metrics of stability in response to cyclones.