Ya-Shin Kuan
Current Organizations / Institutes
The organizations/institutes from the scholar's latest article
Ya-Shin Kuan has a total of 14 co-authors. Here are the top co-authors by number of shared publications:
- Cheng-Shie Wuu
Department of Radiation Oncology, Columbia University, New York, NY 10032, USA
2 shared publications - Liyun Chang
Department of Medical Imaging and Radiological Sciences, I-Shou University, Kaohsiung 82445, Taiwan
2 shared publications - Pei-Ju Chao
Medical Physics and Informatics Laboratory of Electronic Engineering, National Kaohsiung University of Science and Technology, Kaohsiung 80778, Taiwan
2 shared publications - Tsair-Fwu Lee
Medical Physics and Informatics Laboratory of Electronics Engineering, National Kaohsiung University of Science and Technology, Kaohsiung, Taiwan
2 shared publications - Wen-Ping Yun
Medical Physics and Informatics Laboratory of Electronic Engineering, National Kaohsiung University of Science and Technology, Kaohsiung 80778, Taiwan
2 shared publications - Yang-Wei Hsieh
Medical Physics and Informatics Laboratory of Electronic Engineering, National Kaohsiung University of Science and Technology, Kaohsiung 80778, Taiwan
2 shared publications
Latest Publications
- Open Access
Accelerating Evidence Synthesis: A BERT-Assisted Workflow for Meta-Analyses of Radiotherapy Complications in Nasopharyngeal Carcinoma
Background/Objectives: This study developed and evaluated a BERT-assisted literature screening workflow to support meta-analyses of postradiotherapy complications in nasopharyngeal carcinoma patients. The aim was to automate key screening steps to improve downstream screening efficiency and consistency, while minimizing time and bias during manual reviews. Materials and Methods: A bidirectional encoder representations from transformers (BERT) model was integrated into a standard systematic review pipeline for studies on postradiotherapy complications in nasopharyngeal carcinoma. The workflow combined automated BERT-based classification with manual verification and followed PRISMA and PICOS guidelines for literature identification, screening, and eligibility assessment. Model training involved hyperparameter tuning and comparison of different optimizers to maximize screening performance against a manually curated reference set, with particular attention to discrimination (AUC) and processing time. Results: From an initial corpus of 6496 records, the combined automated and manual workflow identified 23 eligible studies for meta-analysis. The included studies showed substantial heterogeneity (I2 = 86.85%), supporting the use of a random-effects model to pool outcomes. The BERT model optimized with an Adagrad optimizer achieved an AUC of 0.77 for relevant-study classification and reduced screening time to 1142 s. To demonstrate the workflow’s utility, a downstream meta-analysis was conducted using the identified studies. As a downstream application based on the identified studies, a quantitative synthesis was conducted, in which (meta-analysis of the 23 included studies), a random forest model—evaluated across those studies—achieved an AUC of 0.92 under a fixed-effect analysis for predicting postradiotherapy complications. Conclusions: Integrating BERT into the literature screening phase of meta-analysis for postradiotherapy nasopharyngeal carcinoma complications markedly improved screening efficiency while maintaining acceptable classification performance. This workflow demonstrates the feasibility of transformer-based assistance for systematic reviews and provides a foundation for developing disease-specific, AI-augmented evidence synthesis pipelines in oncology.
Open AccessAccelerating Evidence Synthesis: A BERT-Assisted Workflow for Meta-Analyses of Radiotherapy Complications in Nasopharyngeal Carcinoma
Background/Objectives: This study developed and evaluated a BERT-assisted literature screening workflow to support meta-analyses of postradiotherapy complications in nasopharyngeal carcinoma patients. The aim was to automate key screening steps to improve downstream screening efficiency and consistency, while minimizing time and bias during manual reviews. Materials and Methods: A bidirectional encoder representations from transformers (BERT) model was integrated into a standard systematic review pipeline for studies on postradiotherapy complications in nasopharyngeal carcinoma. The workflow combined automated BERT-based classification with manual verification and followed PRISMA and PICOS guidelines for literature identification, screening, and eligibility assessment. Model training involved hyperparameter tuning and comparison of different optimizers to maximize screening performance against a manually curated reference set, with particular attention to discrimination (AUC) and processing time. Results: From an initial corpus of 6496 records, the combined automated and manual workflow identified 23 eligible studies for meta-analysis. The included studies showed substantial heterogeneity (I2 = 86.85%), supporting the use of a random-effects model to pool outcomes. The BERT model optimized with an Adagrad optimizer achieved an AUC of 0.77 for relevant-study classification and reduced screening time to 1142 s. To demonstrate the workflow’s utility, a downstream meta-analysis was conducted using the identified studies. As a downstream application based on the identified studies, a quantitative synthesis was conducted, in which (meta-analysis of the 23 included studies), a random forest model—evaluated across those studies—achieved an AUC of 0.92 under a fixed-effect analysis for predicting postradiotherapy complications. Conclusions: Integrating BERT into the literature screening phase of meta-analysis for postradiotherapy nasopharyngeal carcinoma complications markedly improved screening efficiency while maintaining acceptable classification performance. This workflow demonstrates the feasibility of transformer-based assistance for systematic reviews and provides a foundation for developing disease-specific, AI-augmented evidence synthesis pipelines in oncology.
- Open Access
Improving the Prediction of Radiation Pneumonitis: Leveraging Radiomics and Dosiomics Within IDLSS Lung Subregions
Purpose: This study develops a predictive model for radiation pneumonitis (RP) risk in lung cancer patients after volume-modulated arc therapy (VMAT) that leverages high-dimensional dosiomics and dose–volume histogram (DVH) features within IDLSS (incremental-dose interval-based lung subregion) lung subregions. Methods: We retrospectively analyzed data from 136 lung cancer patients treated with VMAT between 2015 and 2022, including 39 patients who developed RP greater than Grade 2. Using the IDLSS method, seven regions of interest (ROIs), including the Planning Target Volume (PTV), normal lung, and five subdivided lung areas, were delineated on pretreatment Computed Tomography (CT) images. DVH, radiomics, and dosiomics features were extracted from these ROIs and organized into nine distinct feature sets. A comprehensive pipeline was applied, integrating IDLSS-defined lung subregions, high-dimensional dosiomics features, LASSO-based feature selection, and SMOTE oversampling to address class imbalance in the training data. Logistic regression, random forest, and feedforward neural networks were constructed and optimized via tenfold cross-validation. Model performance across different feature sets was evaluated via the average AUC, F1 score, and other performance metrics. Results: LASSO regression revealed that BMI and volume within the 5–10 Gy and 10–20 Gy lung subregions were significant predictors of RP. The performance evaluation demonstrated that the dosiomics features consistently outperformed the DVH features across the models. Combining radiomics and dosiomics achieved the highest predictive accuracy (AUC = 0.91, ACC = 0.89, NPV = 0.95, PPV = 0.78, F1 score = 0.82, sensitivity = 0.88, specificity = 0.90). Applying SMOTE during training significantly improved sensitivity without compromising specificity, confirming the value of balancing strategies in enhancing model performance. Incorporating all the features together did not provide additional performance gains. Conclusions: Integrating radiomics and dosiomics features extracted from IDLSS-defined lung subregions significantly enhances the ability to predict RP after VMAT, surpassing traditional DVH metrics. The substantial contribution of dosiomics features highlights the importance of spatial dose heterogeneity in RP risk assessment.
Open AccessImproving the Prediction of Radiation Pneumonitis: Leveraging Radiomics and Dosiomics Within IDLSS Lung Subregions
Purpose: This study develops a predictive model for radiation pneumonitis (RP) risk in lung cancer patients after volume-modulated arc therapy (VMAT) that leverages high-dimensional dosiomics and dose–volume histogram (DVH) features within IDLSS (incremental-dose interval-based lung subregion) lung subregions. Methods: We retrospectively analyzed data from 136 lung cancer patients treated with VMAT between 2015 and 2022, including 39 patients who developed RP greater than Grade 2. Using the IDLSS method, seven regions of interest (ROIs), including the Planning Target Volume (PTV), normal lung, and five subdivided lung areas, were delineated on pretreatment Computed Tomography (CT) images. DVH, radiomics, and dosiomics features were extracted from these ROIs and organized into nine distinct feature sets. A comprehensive pipeline was applied, integrating IDLSS-defined lung subregions, high-dimensional dosiomics features, LASSO-based feature selection, and SMOTE oversampling to address class imbalance in the training data. Logistic regression, random forest, and feedforward neural networks were constructed and optimized via tenfold cross-validation. Model performance across different feature sets was evaluated via the average AUC, F1 score, and other performance metrics. Results: LASSO regression revealed that BMI and volume within the 5–10 Gy and 10–20 Gy lung subregions were significant predictors of RP. The performance evaluation demonstrated that the dosiomics features consistently outperformed the DVH features across the models. Combining radiomics and dosiomics achieved the highest predictive accuracy (AUC = 0.91, ACC = 0.89, NPV = 0.95, PPV = 0.78, F1 score = 0.82, sensitivity = 0.88, specificity = 0.90). Applying SMOTE during training significantly improved sensitivity without compromising specificity, confirming the value of balancing strategies in enhancing model performance. Incorporating all the features together did not provide additional performance gains. Conclusions: Integrating radiomics and dosiomics features extracted from IDLSS-defined lung subregions significantly enhances the ability to predict RP after VMAT, surpassing traditional DVH metrics. The substantial contribution of dosiomics features highlights the importance of spatial dose heterogeneity in RP risk assessment.